miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23317 3' -61.8 NC_005259.1 + 31355 0.66 0.508876
Target:  5'- uGUGACCgACGauguuacCGaGACCGUCCCGUa -3'
miRNA:   3'- cCAUUGGgUGCc------GCcCUGGCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 27384 0.73 0.1796
Target:  5'- cGGUGACCgGCGGCGGugucggcagcGGCgGCagcucggugCCCGCg -3'
miRNA:   3'- -CCAUUGGgUGCCGCC----------CUGgCG---------GGGCG- -5'
23317 3' -61.8 NC_005259.1 + 23731 0.73 0.184165
Target:  5'- cGGU-GCUCAC-GUGGGACggcgaccccgaCGCCCCGCa -3'
miRNA:   3'- -CCAuUGGGUGcCGCCCUG-----------GCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 28292 0.73 0.184165
Target:  5'- uGUAGgCCACGGU---GCCGCCCUGCg -3'
miRNA:   3'- cCAUUgGGUGCCGcccUGGCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 48775 0.73 0.188832
Target:  5'- gGGUAACUUAguucaugucaGGCGGGAaCGUCCCGCc -3'
miRNA:   3'- -CCAUUGGGUg---------CCGCCCUgGCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 60428 0.72 0.193603
Target:  5'- gGGUGGCCCACGG-GGcGGCCaCgCCCGa -3'
miRNA:   3'- -CCAUUGGGUGCCgCC-CUGGcG-GGGCg -5'
23317 3' -61.8 NC_005259.1 + 41723 0.72 0.203463
Target:  5'- ---uACCgGCGGCGGGgaggacACCGCCUCGa -3'
miRNA:   3'- ccauUGGgUGCCGCCC------UGGCGGGGCg -5'
23317 3' -61.8 NC_005259.1 + 1108 0.72 0.208554
Target:  5'- gGGUAACUUAaucggugucaGGCGGGAcagacCCGCCCCa- -3'
miRNA:   3'- -CCAUUGGGUg---------CCGCCCU-----GGCGGGGcg -5'
23317 3' -61.8 NC_005259.1 + 57127 0.72 0.210621
Target:  5'- ---cGCCCAuCGGCGGGACCGagcaguaguggcccuCCCaCGUg -3'
miRNA:   3'- ccauUGGGU-GCCGCCCUGGC---------------GGG-GCG- -5'
23317 3' -61.8 NC_005259.1 + 51081 0.73 0.175136
Target:  5'- cGGUGgcaugGCCCACgauaacgagGGCGGGAuCUGUCCgGCa -3'
miRNA:   3'- -CCAU-----UGGGUG---------CCGCCCU-GGCGGGgCG- -5'
23317 3' -61.8 NC_005259.1 + 14335 0.73 0.175136
Target:  5'- ---cGCCCGCGuGCGGG-CCGCCgaCGCc -3'
miRNA:   3'- ccauUGGGUGC-CGCCCuGGCGGg-GCG- -5'
23317 3' -61.8 NC_005259.1 + 2412 0.73 0.175136
Target:  5'- gGGUAAgUuuucucuuguCAgGGCGGGACgGUCCCGCc -3'
miRNA:   3'- -CCAUUgG----------GUgCCGCCCUGgCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 57 0.83 0.032865
Target:  5'- gGGUAACUUAguucgugucaGGCGGGACCGUCCCGCc -3'
miRNA:   3'- -CCAUUGGGUg---------CCGCCCUGGCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 48051 0.82 0.04088
Target:  5'- cGGUGG-CCACGGCGGGuagcGCCGCCgCGCc -3'
miRNA:   3'- -CCAUUgGGUGCCGCCC----UGGCGGgGCG- -5'
23317 3' -61.8 NC_005259.1 + 65880 0.75 0.122315
Target:  5'- gGGgcGgUCAauCGGCGGGACgGUCCCGCc -3'
miRNA:   3'- -CCauUgGGU--GCCGCCCUGgCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 28492 0.75 0.125537
Target:  5'- gGGUAACUUAUcucuugucaGGCGGGAUCGaCCCGCc -3'
miRNA:   3'- -CCAUUGGGUG---------CCGCCCUGGCgGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 50031 0.75 0.128837
Target:  5'- cGUAAUCCGCuGUGGccucgacACCGCCCCGCa -3'
miRNA:   3'- cCAUUGGGUGcCGCCc------UGGCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 8665 0.75 0.132217
Target:  5'- cGGgcuGCCaCGCGGgcaaCGGGGCCGCCUCGa -3'
miRNA:   3'- -CCau-UGG-GUGCC----GCCCUGGCGGGGCg -5'
23317 3' -61.8 NC_005259.1 + 25727 0.74 0.158253
Target:  5'- gGGUAccaacaaCCACGaaGGGACCGCCgCGCa -3'
miRNA:   3'- -CCAUug-----GGUGCcgCCCUGGCGGgGCG- -5'
23317 3' -61.8 NC_005259.1 + 66508 0.73 0.166502
Target:  5'- ----uUCCuguCGGCGGGGCgGUCCCGCc -3'
miRNA:   3'- ccauuGGGu--GCCGCCCUGgCGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.