miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23319 5' -64.9 NC_005259.1 + 12218 1.07 0.000195
Target:  5'- cGGCGCACCGCCCGCUGGCCGGGCAAUg -3'
miRNA:   3'- -CCGCGUGGCGGGCGACCGGCCCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 47964 0.8 0.028576
Target:  5'- uGGCcgccGCGCCGCCCGCgaauauGCCGGGCAGc -3'
miRNA:   3'- -CCG----CGUGGCGGGCGac----CGGCCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 63643 0.79 0.031902
Target:  5'- uGGCGaGCUGCUCGCUGGCCGGGaCGc- -3'
miRNA:   3'- -CCGCgUGGCGGGCGACCGGCCC-GUua -5'
23319 5' -64.9 NC_005259.1 + 35091 0.78 0.042431
Target:  5'- uGCGCaguccacaagcaguuGCCGCCCGUUGGCCcGGCGGUg -3'
miRNA:   3'- cCGCG---------------UGGCGGGCGACCGGcCCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 26799 0.75 0.06845
Target:  5'- aGCGcCGCCGCCCgGUUGGCCGguaccGGCGGUg -3'
miRNA:   3'- cCGC-GUGGCGGG-CGACCGGC-----CCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 10736 0.75 0.07224
Target:  5'- cGGUGauCACCGCgCGCU-GCCGGGCGAUc -3'
miRNA:   3'- -CCGC--GUGGCGgGCGAcCGGCCCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 14226 0.74 0.074209
Target:  5'- cGGCGCGCguCGUgCGUaucgGGCCGGGCAAc -3'
miRNA:   3'- -CCGCGUG--GCGgGCGa---CCGGCCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 16491 0.74 0.080431
Target:  5'- gGGCGCAcCCGCgCGCaUGGCCGaGaGCGAg -3'
miRNA:   3'- -CCGCGU-GGCGgGCG-ACCGGC-C-CGUUa -5'
23319 5' -64.9 NC_005259.1 + 9807 0.73 0.10222
Target:  5'- cGCGCcacuACCGCCCGCaccGCCGGGUg-- -3'
miRNA:   3'- cCGCG----UGGCGGGCGac-CGGCCCGuua -5'
23319 5' -64.9 NC_005259.1 + 36846 0.72 0.110647
Target:  5'- cGUGCugacGCCGCCCGCUGcGCCGuugcuGGCAc- -3'
miRNA:   3'- cCGCG----UGGCGGGCGAC-CGGC-----CCGUua -5'
23319 5' -64.9 NC_005259.1 + 66255 0.72 0.116622
Target:  5'- cGCaGCGCgGCCCGC--GCCGGGCGGc -3'
miRNA:   3'- cCG-CGUGgCGGGCGacCGGCCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 14727 0.72 0.116622
Target:  5'- cGCGCucgUCGCCgagauguacgCGCUGGCCGGGCc-- -3'
miRNA:   3'- cCGCGu--GGCGG----------GCGACCGGCCCGuua -5'
23319 5' -64.9 NC_005259.1 + 67112 0.71 0.12615
Target:  5'- aGGUGUACUGCCCGCUgcGGUCGuGCGu- -3'
miRNA:   3'- -CCGCGUGGCGGGCGA--CCGGCcCGUua -5'
23319 5' -64.9 NC_005259.1 + 1373 0.71 0.143645
Target:  5'- cGcCGCGCCGCCCGCgaGGCCcGcGCAu- -3'
miRNA:   3'- cC-GCGUGGCGGGCGa-CCGGcC-CGUua -5'
23319 5' -64.9 NC_005259.1 + 45615 0.7 0.1474
Target:  5'- cGGUcuCGauGCCCGCcgGGCCGGGCAGc -3'
miRNA:   3'- -CCGc-GUggCGGGCGa-CCGGCCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 44470 0.7 0.15518
Target:  5'- uGC-CGCCGCCC--UGGCCGGGCc-- -3'
miRNA:   3'- cCGcGUGGCGGGcgACCGGCCCGuua -5'
23319 5' -64.9 NC_005259.1 + 30796 0.69 0.19013
Target:  5'- cGCGUACCGCCgGaacacCUGaGUCGGGUAGUc -3'
miRNA:   3'- cCGCGUGGCGGgC-----GAC-CGGCCCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 25077 0.69 0.194956
Target:  5'- uGGCGCugccACCG-CCGCUGcGCCcgccccgagcaaGGGCAAg -3'
miRNA:   3'- -CCGCG----UGGCgGGCGAC-CGG------------CCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 63853 0.69 0.194956
Target:  5'- cGCGUACCggcgaggugGCCgGCUGGCCuugcguGGGCGu- -3'
miRNA:   3'- cCGCGUGG---------CGGgCGACCGG------CCCGUua -5'
23319 5' -64.9 NC_005259.1 + 68605 0.68 0.20493
Target:  5'- aGCGUcaaggaACCGCuuGUUGGCCagccGGGCAc- -3'
miRNA:   3'- cCGCG------UGGCGggCGACCGG----CCCGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.