miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23319 5' -64.9 NC_005259.1 + 1373 0.71 0.143645
Target:  5'- cGcCGCGCCGCCCGCgaGGCCcGcGCAu- -3'
miRNA:   3'- cC-GCGUGGCGGGCGa-CCGGcC-CGUua -5'
23319 5' -64.9 NC_005259.1 + 2164 0.66 0.315625
Target:  5'- cGGCGUcgaGCCGCCgGUUgccgaggucaugGGCCGcuacGGCAAg -3'
miRNA:   3'- -CCGCG---UGGCGGgCGA------------CCGGC----CCGUUa -5'
23319 5' -64.9 NC_005259.1 + 3313 0.66 0.287615
Target:  5'- aGCGCugCGUCgaCGUgagcGCCGGGCAGc -3'
miRNA:   3'- cCGCGugGCGG--GCGac--CGGCCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 3511 0.66 0.308435
Target:  5'- uGUGCGCCGCCgCGUUcaaCGGGCAc- -3'
miRNA:   3'- cCGCGUGGCGG-GCGAccgGCCCGUua -5'
23319 5' -64.9 NC_005259.1 + 5515 0.68 0.23181
Target:  5'- cGCGCGCCgcGCCCGCaaGCUGuGGCu-- -3'
miRNA:   3'- cCGCGUGG--CGGGCGacCGGC-CCGuua -5'
23319 5' -64.9 NC_005259.1 + 7856 0.67 0.264112
Target:  5'- cGGacCGCGCCGacCCCGgUGGCCcgagugcuuggacucGGGCAGc -3'
miRNA:   3'- -CC--GCGUGGC--GGGCgACCGG---------------CCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 9807 0.73 0.10222
Target:  5'- cGCGCcacuACCGCCCGCaccGCCGGGUg-- -3'
miRNA:   3'- cCGCG----UGGCGGGCGac-CGGCCCGuua -5'
23319 5' -64.9 NC_005259.1 + 10736 0.75 0.07224
Target:  5'- cGGUGauCACCGCgCGCU-GCCGGGCGAUc -3'
miRNA:   3'- -CCGC--GUGGCGgGCGAcCGGCCCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 11425 0.67 0.239851
Target:  5'- cGGUGCaacggggaugcuuggGCCGCUCGCUGccGCCGGuGCc-- -3'
miRNA:   3'- -CCGCG---------------UGGCGGGCGAC--CGGCC-CGuua -5'
23319 5' -64.9 NC_005259.1 + 12218 1.07 0.000195
Target:  5'- cGGCGCACCGCCCGCUGGCCGGGCAAUg -3'
miRNA:   3'- -CCGCGUGGCGGGCGACCGGCCCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 14226 0.74 0.074209
Target:  5'- cGGCGCGCguCGUgCGUaucgGGCCGGGCAAc -3'
miRNA:   3'- -CCGCGUG--GCGgGCGa---CCGGCCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 14727 0.72 0.116622
Target:  5'- cGCGCucgUCGCCgagauguacgCGCUGGCCGGGCc-- -3'
miRNA:   3'- cCGCGu--GGCGG----------GCGACCGGCCCGuua -5'
23319 5' -64.9 NC_005259.1 + 14777 0.66 0.308435
Target:  5'- -aCGCGCCGUucgacaucccuCCGCUGuuccacGCCGGGCu-- -3'
miRNA:   3'- ccGCGUGGCG-----------GGCGAC------CGGCCCGuua -5'
23319 5' -64.9 NC_005259.1 + 14969 0.68 0.222352
Target:  5'- aGGCGCauucaagGCCGCCggguacaagacacaGCaGGCCGGGUAc- -3'
miRNA:   3'- -CCGCG-------UGGCGGg-------------CGaCCGGCCCGUua -5'
23319 5' -64.9 NC_005259.1 + 15538 0.66 0.308435
Target:  5'- aGGC-CGCCGUCa-CUGGCCGGuGCc-- -3'
miRNA:   3'- -CCGcGUGGCGGgcGACCGGCC-CGuua -5'
23319 5' -64.9 NC_005259.1 + 16491 0.74 0.080431
Target:  5'- gGGCGCAcCCGCgCGCaUGGCCGaGaGCGAg -3'
miRNA:   3'- -CCGCGU-GGCGgGCG-ACCGGC-C-CGUUa -5'
23319 5' -64.9 NC_005259.1 + 17761 0.67 0.267918
Target:  5'- aGGC-CGCCGCgCGCcgGGCCGaGcGCAc- -3'
miRNA:   3'- -CCGcGUGGCGgGCGa-CCGGC-C-CGUua -5'
23319 5' -64.9 NC_005259.1 + 25077 0.69 0.194956
Target:  5'- uGGCGCugccACCG-CCGCUGcGCCcgccccgagcaaGGGCAAg -3'
miRNA:   3'- -CCGCG----UGGCgGGCGAC-CGG------------CCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 25951 0.66 0.280926
Target:  5'- cGGUGC-CCgGCCCGCcgacgccugcgaUGaGaCCGGGCAGc -3'
miRNA:   3'- -CCGCGuGG-CGGGCG------------AC-C-GGCCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 26666 0.67 0.261599
Target:  5'- cGGCGCACCcggcggcaGCCCGCccaucgaGGCgGGGa--- -3'
miRNA:   3'- -CCGCGUGG--------CGGGCGa------CCGgCCCguua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.