Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23319 | 5' | -64.9 | NC_005259.1 | + | 60152 | 0.66 | 0.315625 |
Target: 5'- uGGC-CGCCGCCUcaGC-GGCCucacGGGCGGc -3' miRNA: 3'- -CCGcGUGGCGGG--CGaCCGG----CCCGUUa -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 67112 | 0.71 | 0.12615 |
Target: 5'- aGGUGUACUGCCCGCUgcGGUCGuGCGu- -3' miRNA: 3'- -CCGCGUGGCGGGCGA--CCGGCcCGUua -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 1373 | 0.71 | 0.143645 |
Target: 5'- cGcCGCGCCGCCCGCgaGGCCcGcGCAu- -3' miRNA: 3'- cC-GCGUGGCGGGCGa-CCGGcC-CGUua -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 45615 | 0.7 | 0.1474 |
Target: 5'- cGGUcuCGauGCCCGCcgGGCCGGGCAGc -3' miRNA: 3'- -CCGc-GUggCGGGCGa-CCGGCCCGUUa -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 44470 | 0.7 | 0.15518 |
Target: 5'- uGC-CGCCGCCC--UGGCCGGGCc-- -3' miRNA: 3'- cCGcGUGGCGGGcgACCGGCCCGuua -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 30796 | 0.69 | 0.19013 |
Target: 5'- cGCGUACCGCCgGaacacCUGaGUCGGGUAGUc -3' miRNA: 3'- cCGCGUGGCGGgC-----GAC-CGGCCCGUUA- -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 25077 | 0.69 | 0.194956 |
Target: 5'- uGGCGCugccACCG-CCGCUGcGCCcgccccgagcaaGGGCAAg -3' miRNA: 3'- -CCGCG----UGGCgGGCGAC-CGG------------CCCGUUa -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 63853 | 0.69 | 0.194956 |
Target: 5'- cGCGUACCggcgaggugGCCgGCUGGCCuugcguGGGCGu- -3' miRNA: 3'- cCGCGUGG---------CGGgCGACCGG------CCCGUua -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 68605 | 0.68 | 0.20493 |
Target: 5'- aGCGUcaaggaACCGCuuGUUGGCCagccGGGCAc- -3' miRNA: 3'- cCGCG------UGGCGggCGACCGG----CCCGUua -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 66255 | 0.72 | 0.116622 |
Target: 5'- cGCaGCGCgGCCCGC--GCCGGGCGGc -3' miRNA: 3'- cCG-CGUGgCGGGCGacCGGCCCGUUa -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 14727 | 0.72 | 0.116622 |
Target: 5'- cGCGCucgUCGCCgagauguacgCGCUGGCCGGGCc-- -3' miRNA: 3'- cCGCGu--GGCGG----------GCGACCGGCCCGuua -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 36846 | 0.72 | 0.110647 |
Target: 5'- cGUGCugacGCCGCCCGCUGcGCCGuugcuGGCAc- -3' miRNA: 3'- cCGCG----UGGCGGGCGAC-CGGC-----CCGUua -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 47964 | 0.8 | 0.028576 |
Target: 5'- uGGCcgccGCGCCGCCCGCgaauauGCCGGGCAGc -3' miRNA: 3'- -CCG----CGUGGCGGGCGac----CGGCCCGUUa -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 63643 | 0.79 | 0.031902 |
Target: 5'- uGGCGaGCUGCUCGCUGGCCGGGaCGc- -3' miRNA: 3'- -CCGCgUGGCGGGCGACCGGCCC-GUua -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 35091 | 0.78 | 0.042431 |
Target: 5'- uGCGCaguccacaagcaguuGCCGCCCGUUGGCCcGGCGGUg -3' miRNA: 3'- cCGCG---------------UGGCGGGCGACCGGcCCGUUA- -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 26799 | 0.75 | 0.06845 |
Target: 5'- aGCGcCGCCGCCCgGUUGGCCGguaccGGCGGUg -3' miRNA: 3'- cCGC-GUGGCGGG-CGACCGGC-----CCGUUA- -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 10736 | 0.75 | 0.07224 |
Target: 5'- cGGUGauCACCGCgCGCU-GCCGGGCGAUc -3' miRNA: 3'- -CCGC--GUGGCGgGCGAcCGGCCCGUUA- -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 14226 | 0.74 | 0.074209 |
Target: 5'- cGGCGCGCguCGUgCGUaucgGGCCGGGCAAc -3' miRNA: 3'- -CCGCGUG--GCGgGCGa---CCGGCCCGUUa -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 16491 | 0.74 | 0.080431 |
Target: 5'- gGGCGCAcCCGCgCGCaUGGCCGaGaGCGAg -3' miRNA: 3'- -CCGCGU-GGCGgGCG-ACCGGC-C-CGUUa -5' |
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23319 | 5' | -64.9 | NC_005259.1 | + | 9807 | 0.73 | 0.10222 |
Target: 5'- cGCGCcacuACCGCCCGCaccGCCGGGUg-- -3' miRNA: 3'- cCGCG----UGGCGGGCGac-CGGCCCGuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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