Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23324 | 3' | -54 | NC_005259.1 | + | 10109 | 1.13 | 0.000957 |
Target: 5'- aCCGAGCUCAAGACCGUGCGCAUCAGCc -3' miRNA: 3'- -GGCUCGAGUUCUGGCACGCGUAGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 20032 | 0.79 | 0.197977 |
Target: 5'- aCGGGCUCAAGACCGUcaaGCGCu---GCg -3' miRNA: 3'- gGCUCGAGUUCUGGCA---CGCGuaguCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 39798 | 0.75 | 0.348064 |
Target: 5'- gCCGAGCUCAAG-CCGaaagaaauuggccaGCGCAUUgAGCg -3' miRNA: 3'- -GGCUCGAGUUCuGGCa-------------CGCGUAG-UCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 14947 | 0.74 | 0.396397 |
Target: 5'- uCCGAGUUCAAGGgCGgcauggagGCGCAUUcaaGGCc -3' miRNA: 3'- -GGCUCGAGUUCUgGCa-------CGCGUAG---UCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 30094 | 0.74 | 0.396397 |
Target: 5'- aCCGccCUCGucGGAgCUGUGUGCAUCGGCa -3' miRNA: 3'- -GGCucGAGU--UCU-GGCACGCGUAGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 19447 | 0.74 | 0.405471 |
Target: 5'- cCCGAGgcugucaUCGAGaccGCCGUGCGCAuccgUCAGUu -3' miRNA: 3'- -GGCUCg------AGUUC---UGGCACGCGU----AGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 4433 | 0.74 | 0.424007 |
Target: 5'- cCCGAGgUCGAGccgcCCGUGCGagugggCAGCg -3' miRNA: 3'- -GGCUCgAGUUCu---GGCACGCgua---GUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 64757 | 0.73 | 0.433463 |
Target: 5'- aCCGcGcCUCGcGACgGUGCGCcUCGGCg -3' miRNA: 3'- -GGCuC-GAGUuCUGgCACGCGuAGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 44753 | 0.72 | 0.523566 |
Target: 5'- gCCGAgGCUCuuGAGcACCGauccCGCAUCGGCg -3' miRNA: 3'- -GGCU-CGAG--UUC-UGGCac--GCGUAGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 55749 | 0.71 | 0.576643 |
Target: 5'- gUGGugUCGAGACCGUGCGCAgccGCg -3' miRNA: 3'- gGCUcgAGUUCUGGCACGCGUaguCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 56422 | 0.71 | 0.586343 |
Target: 5'- gCCGAGCUCAAGcagagcagcgagcGCCGgGC-CAcgCAGCu -3' miRNA: 3'- -GGCUCGAGUUC-------------UGGCaCGcGUa-GUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 11304 | 0.71 | 0.587423 |
Target: 5'- aCGGGCgUGAGGCCGagacggGCGCG-CAGCu -3' miRNA: 3'- gGCUCGaGUUCUGGCa-----CGCGUaGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 26630 | 0.7 | 0.598238 |
Target: 5'- gCCGAuaUCGAuGGCCuggcGUGCGC-UCGGCa -3' miRNA: 3'- -GGCUcgAGUU-CUGG----CACGCGuAGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 58380 | 0.7 | 0.598238 |
Target: 5'- -aGAGCUgCuccGACgGUGCGCAcCAGCc -3' miRNA: 3'- ggCUCGA-Guu-CUGgCACGCGUaGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 23344 | 0.7 | 0.609082 |
Target: 5'- aUCGGGCUCGAGGCUGccUGCGa---GGCc -3' miRNA: 3'- -GGCUCGAGUUCUGGC--ACGCguagUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 63072 | 0.7 | 0.609082 |
Target: 5'- aUGAGCUCAGGGuucuUgGUGaCGaCAUCGGCu -3' miRNA: 3'- gGCUCGAGUUCU----GgCAC-GC-GUAGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 8544 | 0.7 | 0.618859 |
Target: 5'- aUGAGCUCGgcgguguAGcCCaUGCGCcgCAGCa -3' miRNA: 3'- gGCUCGAGU-------UCuGGcACGCGuaGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 52271 | 0.7 | 0.63082 |
Target: 5'- gCCGGGCagaCAGGACCGgcccgaUGCGCGccuaucucuaccUCGGUa -3' miRNA: 3'- -GGCUCGa--GUUCUGGC------ACGCGU------------AGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 65091 | 0.7 | 0.641695 |
Target: 5'- gUCGAGCUCGGcucguGGCacggucaGUGCGUcaccGUCGGCg -3' miRNA: 3'- -GGCUCGAGUU-----CUGg------CACGCG----UAGUCG- -5' |
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23324 | 3' | -54 | NC_005259.1 | + | 23509 | 0.7 | 0.641695 |
Target: 5'- gCCGAGCUCAGcgacgagaucucGACgGUGaaaAUCAGCc -3' miRNA: 3'- -GGCUCGAGUU------------CUGgCACgcgUAGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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