miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23324 3' -54 NC_005259.1 + 57761 0.66 0.860107
Target:  5'- gCGAGCcgCGAGcgccuGCUGaaucUGCGCGUCGGa -3'
miRNA:   3'- gGCUCGa-GUUC-----UGGC----ACGCGUAGUCg -5'
23324 3' -54 NC_005259.1 + 26630 0.7 0.598238
Target:  5'- gCCGAuaUCGAuGGCCuggcGUGCGC-UCGGCa -3'
miRNA:   3'- -GGCUcgAGUU-CUGG----CACGCGuAGUCG- -5'
23324 3' -54 NC_005259.1 + 58380 0.7 0.598238
Target:  5'- -aGAGCUgCuccGACgGUGCGCAcCAGCc -3'
miRNA:   3'- ggCUCGA-Guu-CUGgCACGCGUaGUCG- -5'
23324 3' -54 NC_005259.1 + 23344 0.7 0.609082
Target:  5'- aUCGGGCUCGAGGCUGccUGCGa---GGCc -3'
miRNA:   3'- -GGCUCGAGUUCUGGC--ACGCguagUCG- -5'
23324 3' -54 NC_005259.1 + 63072 0.7 0.609082
Target:  5'- aUGAGCUCAGGGuucuUgGUGaCGaCAUCGGCu -3'
miRNA:   3'- gGCUCGAGUUCU----GgCAC-GC-GUAGUCG- -5'
23324 3' -54 NC_005259.1 + 8544 0.7 0.618859
Target:  5'- aUGAGCUCGgcgguguAGcCCaUGCGCcgCAGCa -3'
miRNA:   3'- gGCUCGAGU-------UCuGGcACGCGuaGUCG- -5'
23324 3' -54 NC_005259.1 + 52271 0.7 0.63082
Target:  5'- gCCGGGCagaCAGGACCGgcccgaUGCGCGccuaucucuaccUCGGUa -3'
miRNA:   3'- -GGCUCGa--GUUCUGGC------ACGCGU------------AGUCG- -5'
23324 3' -54 NC_005259.1 + 21215 0.7 0.641695
Target:  5'- gCCGAGCUCAuccgaGCCGaguaCGCcUCGGCa -3'
miRNA:   3'- -GGCUCGAGUuc---UGGCac--GCGuAGUCG- -5'
23324 3' -54 NC_005259.1 + 65091 0.7 0.641695
Target:  5'- gUCGAGCUCGGcucguGGCacggucaGUGCGUcaccGUCGGCg -3'
miRNA:   3'- -GGCUCGAGUU-----CUGg------CACGCG----UAGUCG- -5'
23324 3' -54 NC_005259.1 + 11304 0.71 0.587423
Target:  5'- aCGGGCgUGAGGCCGagacggGCGCG-CAGCu -3'
miRNA:   3'- gGCUCGaGUUCUGGCa-----CGCGUaGUCG- -5'
23324 3' -54 NC_005259.1 + 56422 0.71 0.586343
Target:  5'- gCCGAGCUCAAGcagagcagcgagcGCCGgGC-CAcgCAGCu -3'
miRNA:   3'- -GGCUCGAGUUC-------------UGGCaCGcGUa-GUCG- -5'
23324 3' -54 NC_005259.1 + 55749 0.71 0.576643
Target:  5'- gUGGugUCGAGACCGUGCGCAgccGCg -3'
miRNA:   3'- gGCUcgAGUUCUGGCACGCGUaguCG- -5'
23324 3' -54 NC_005259.1 + 20032 0.79 0.197977
Target:  5'- aCGGGCUCAAGACCGUcaaGCGCu---GCg -3'
miRNA:   3'- gGCUCGAGUUCUGGCA---CGCGuaguCG- -5'
23324 3' -54 NC_005259.1 + 39798 0.75 0.348064
Target:  5'- gCCGAGCUCAAG-CCGaaagaaauuggccaGCGCAUUgAGCg -3'
miRNA:   3'- -GGCUCGAGUUCuGGCa-------------CGCGUAG-UCG- -5'
23324 3' -54 NC_005259.1 + 14947 0.74 0.396397
Target:  5'- uCCGAGUUCAAGGgCGgcauggagGCGCAUUcaaGGCc -3'
miRNA:   3'- -GGCUCGAGUUCUgGCa-------CGCGUAG---UCG- -5'
23324 3' -54 NC_005259.1 + 30094 0.74 0.396397
Target:  5'- aCCGccCUCGucGGAgCUGUGUGCAUCGGCa -3'
miRNA:   3'- -GGCucGAGU--UCU-GGCACGCGUAGUCG- -5'
23324 3' -54 NC_005259.1 + 19447 0.74 0.405471
Target:  5'- cCCGAGgcugucaUCGAGaccGCCGUGCGCAuccgUCAGUu -3'
miRNA:   3'- -GGCUCg------AGUUC---UGGCACGCGU----AGUCG- -5'
23324 3' -54 NC_005259.1 + 4433 0.74 0.424007
Target:  5'- cCCGAGgUCGAGccgcCCGUGCGagugggCAGCg -3'
miRNA:   3'- -GGCUCgAGUUCu---GGCACGCgua---GUCG- -5'
23324 3' -54 NC_005259.1 + 64757 0.73 0.433463
Target:  5'- aCCGcGcCUCGcGACgGUGCGCcUCGGCg -3'
miRNA:   3'- -GGCuC-GAGUuCUGgCACGCGuAGUCG- -5'
23324 3' -54 NC_005259.1 + 44753 0.72 0.523566
Target:  5'- gCCGAgGCUCuuGAGcACCGauccCGCAUCGGCg -3'
miRNA:   3'- -GGCU-CGAG--UUC-UGGCac--GCGUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.