miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23324 3' -54 NC_005259.1 + 658 0.68 0.758485
Target:  5'- aCGuGCUCGAGggcauGCUGUG-GC-UCAGCa -3'
miRNA:   3'- gGCuCGAGUUC-----UGGCACgCGuAGUCG- -5'
23324 3' -54 NC_005259.1 + 1331 0.67 0.788303
Target:  5'- gUCGAuuUCGAGAUCGaGCGCAaCGGUg -3'
miRNA:   3'- -GGCUcgAGUUCUGGCaCGCGUaGUCG- -5'
23324 3' -54 NC_005259.1 + 1552 0.68 0.737958
Target:  5'- gCCGcGUUCGGGGCgGUGaCGCuGUgAGCg -3'
miRNA:   3'- -GGCuCGAGUUCUGgCAC-GCG-UAgUCG- -5'
23324 3' -54 NC_005259.1 + 2183 0.68 0.73484
Target:  5'- gCCGAGgUCAuGGGCCGcuacggcaaggugcUGCGCAcCgAGCg -3'
miRNA:   3'- -GGCUCgAGU-UCUGGC--------------ACGCGUaG-UCG- -5'
23324 3' -54 NC_005259.1 + 4433 0.74 0.424007
Target:  5'- cCCGAGgUCGAGccgcCCGUGCGagugggCAGCg -3'
miRNA:   3'- -GGCUCgAGUUCu---GGCACGCgua---GUCG- -5'
23324 3' -54 NC_005259.1 + 4767 0.66 0.843383
Target:  5'- gCCGGGCUCAagcAGAUC---CGCAaCGGCg -3'
miRNA:   3'- -GGCUCGAGU---UCUGGcacGCGUaGUCG- -5'
23324 3' -54 NC_005259.1 + 6425 0.66 0.825792
Target:  5'- cCCGAcCUCGccgaugucGGcACCGUcGCGCugAUCGGCa -3'
miRNA:   3'- -GGCUcGAGU--------UC-UGGCA-CGCG--UAGUCG- -5'
23324 3' -54 NC_005259.1 + 7334 0.69 0.706413
Target:  5'- gCCGAGUacgUCGAGGCCGgacagacguucgUGCuGUggCAGCa -3'
miRNA:   3'- -GGCUCG---AGUUCUGGC------------ACG-CGuaGUCG- -5'
23324 3' -54 NC_005259.1 + 7646 0.66 0.834691
Target:  5'- gCCGAGUUCGAccGCCGU-CGuCGUgAGCg -3'
miRNA:   3'- -GGCUCGAGUUc-UGGCAcGC-GUAgUCG- -5'
23324 3' -54 NC_005259.1 + 8069 0.69 0.68501
Target:  5'- gCCGAcaUCGAGAUCGUGCcGCGcUGGCg -3'
miRNA:   3'- -GGCUcgAGUUCUGGCACG-CGUaGUCG- -5'
23324 3' -54 NC_005259.1 + 8544 0.7 0.618859
Target:  5'- aUGAGCUCGgcgguguAGcCCaUGCGCcgCAGCa -3'
miRNA:   3'- gGCUCGAGU-------UCuGGcACGCGuaGUCG- -5'
23324 3' -54 NC_005259.1 + 8754 0.67 0.807406
Target:  5'- gUCGAGgUCGAGGCCcuuggccaGCGCggCGGUg -3'
miRNA:   3'- -GGCUCgAGUUCUGGca------CGCGuaGUCG- -5'
23324 3' -54 NC_005259.1 + 10109 1.13 0.000957
Target:  5'- aCCGAGCUCAAGACCGUGCGCAUCAGCc -3'
miRNA:   3'- -GGCUCGAGUUCUGGCACGCGUAGUCG- -5'
23324 3' -54 NC_005259.1 + 11237 0.69 0.695742
Target:  5'- cUCGGGCUCGGGcAUCGcGCGCAccacgUgGGCu -3'
miRNA:   3'- -GGCUCGAGUUC-UGGCaCGCGU-----AgUCG- -5'
23324 3' -54 NC_005259.1 + 11304 0.71 0.587423
Target:  5'- aCGGGCgUGAGGCCGagacggGCGCG-CAGCu -3'
miRNA:   3'- gGCUCGaGUUCUGGCa-----CGCGUaGUCG- -5'
23324 3' -54 NC_005259.1 + 11728 0.66 0.825792
Target:  5'- gCGAgGCUCAGaucGAUgGUGCGCAgaCGGUc -3'
miRNA:   3'- gGCU-CGAGUU---CUGgCACGCGUa-GUCG- -5'
23324 3' -54 NC_005259.1 + 13421 0.67 0.816694
Target:  5'- gCCGGGgUCGccgccgGGGCCGcgcuagGCGUgaccGUCGGCg -3'
miRNA:   3'- -GGCUCgAGU------UCUGGCa-----CGCG----UAGUCG- -5'
23324 3' -54 NC_005259.1 + 14201 0.67 0.816694
Target:  5'- cCCGAGCaggcCGGGAucaacuacCCGgcGCGCGUCGuGCg -3'
miRNA:   3'- -GGCUCGa---GUUCU--------GGCa-CGCGUAGU-CG- -5'
23324 3' -54 NC_005259.1 + 14545 0.69 0.695742
Target:  5'- gCCGAGUUCGuccggcAGGCCGaGCGgGgacCGGCg -3'
miRNA:   3'- -GGCUCGAGU------UCUGGCaCGCgUa--GUCG- -5'
23324 3' -54 NC_005259.1 + 14947 0.74 0.396397
Target:  5'- uCCGAGUUCAAGGgCGgcauggagGCGCAUUcaaGGCc -3'
miRNA:   3'- -GGCUCGAGUUCUgGCa-------CGCGUAG---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.