miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23324 5' -54.8 NC_005259.1 + 36865 0.66 0.822523
Target:  5'- gCGCCGUUgcuggcacCGCcCGCGCcGACGAc-- -3'
miRNA:   3'- gGCGGCAA--------GCGuGCGUGaCUGCUaga -5'
23324 5' -54.8 NC_005259.1 + 55904 0.66 0.822523
Target:  5'- gCGCCGgggUCGCugGC-CaGACcgcuGGUCUg -3'
miRNA:   3'- gGCGGCa--AGCGugCGuGaCUG----CUAGA- -5'
23324 5' -54.8 NC_005259.1 + 31836 0.66 0.794798
Target:  5'- gCGUCGaucuucUCGCGCGUgaccgcgucAUUGGCGAUCUu -3'
miRNA:   3'- gGCGGCa-----AGCGUGCG---------UGACUGCUAGA- -5'
23324 5' -54.8 NC_005259.1 + 6122 0.66 0.794798
Target:  5'- gCCGCCGcuaCGCGgGCACUGcaACGcgUa -3'
miRNA:   3'- -GGCGGCaa-GCGUgCGUGAC--UGCuaGa -5'
23324 5' -54.8 NC_005259.1 + 52029 0.67 0.784253
Target:  5'- gCCGCCGcacUGCGCGCugUcgccgucGAgGAUCg -3'
miRNA:   3'- -GGCGGCaa-GCGUGCGugA-------CUgCUAGa -5'
23324 5' -54.8 NC_005259.1 + 30718 0.67 0.775488
Target:  5'- gCCGCCGacgCGC-CGCACgaGCGAUa- -3'
miRNA:   3'- -GGCGGCaa-GCGuGCGUGacUGCUAga -5'
23324 5' -54.8 NC_005259.1 + 35057 0.67 0.775488
Target:  5'- gUCGCCGgacaCGC-CGCccuuGCUGACGGUg- -3'
miRNA:   3'- -GGCGGCaa--GCGuGCG----UGACUGCUAga -5'
23324 5' -54.8 NC_005259.1 + 65173 0.67 0.765616
Target:  5'- cCCGCCGggucaAgGCGCUGGuCGAUCa -3'
miRNA:   3'- -GGCGGCaagcgUgCGUGACU-GCUAGa -5'
23324 5' -54.8 NC_005259.1 + 20112 0.67 0.765616
Target:  5'- gCCGCCGUcUCaagGC-CGCACUGGCugccGUCg -3'
miRNA:   3'- -GGCGGCA-AG---CGuGCGUGACUGc---UAGa -5'
23324 5' -54.8 NC_005259.1 + 51663 0.67 0.755612
Target:  5'- gCCGCgCGggCGCgucgggcacggGCGCGC-GAUGGUCUc -3'
miRNA:   3'- -GGCG-GCaaGCG-----------UGCGUGaCUGCUAGA- -5'
23324 5' -54.8 NC_005259.1 + 48617 0.67 0.755612
Target:  5'- aCCGCCGUgCGCACuGC-CUcgccgaGACGggCUg -3'
miRNA:   3'- -GGCGGCAaGCGUG-CGuGA------CUGCuaGA- -5'
23324 5' -54.8 NC_005259.1 + 32366 0.67 0.745489
Target:  5'- aCCGCCGUguaggGCGgGCACUGcccgccgucGCGAUa- -3'
miRNA:   3'- -GGCGGCAag---CGUgCGUGAC---------UGCUAga -5'
23324 5' -54.8 NC_005259.1 + 62182 0.67 0.745489
Target:  5'- cUCGacaCGUUCGuCACGCAC--ACGGUCa -3'
miRNA:   3'- -GGCg--GCAAGC-GUGCGUGacUGCUAGa -5'
23324 5' -54.8 NC_005259.1 + 24351 0.67 0.745489
Target:  5'- aCCGCCGggUGCuCGCACaccgaGGUCUg -3'
miRNA:   3'- -GGCGGCaaGCGuGCGUGacug-CUAGA- -5'
23324 5' -54.8 NC_005259.1 + 6354 0.68 0.736283
Target:  5'- gUGCCGUaCGUGCGCACguugucgccgggcgcGAUGGUCa -3'
miRNA:   3'- gGCGGCAaGCGUGCGUGa--------------CUGCUAGa -5'
23324 5' -54.8 NC_005259.1 + 12807 0.68 0.735255
Target:  5'- aCGCUG-UCGCGCGCAC--GCGcgCg -3'
miRNA:   3'- gGCGGCaAGCGUGCGUGacUGCuaGa -5'
23324 5' -54.8 NC_005259.1 + 14734 0.68 0.714503
Target:  5'- gUCGCCGagaUGUACGCGCUGGCcgggccgguGAUCc -3'
miRNA:   3'- -GGCGGCaa-GCGUGCGUGACUG---------CUAGa -5'
23324 5' -54.8 NC_005259.1 + 43890 0.68 0.714503
Target:  5'- gCCGCCGacaUUGCcCGCGCcGGCuGAUCg -3'
miRNA:   3'- -GGCGGCa--AGCGuGCGUGaCUG-CUAGa -5'
23324 5' -54.8 NC_005259.1 + 20198 0.68 0.714503
Target:  5'- aUCGCCGgUUGCAagacCGaACUGugGAUCUu -3'
miRNA:   3'- -GGCGGCaAGCGU----GCgUGACugCUAGA- -5'
23324 5' -54.8 NC_005259.1 + 28017 0.68 0.711361
Target:  5'- gUCGCCGgggUUGCGCGCGUUGGCcagccacggcuuggGAUCg -3'
miRNA:   3'- -GGCGGCa--AGCGUGCGUGACUG--------------CUAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.