miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23326 3' -64.4 NC_005259.1 + 68615 0.67 0.300368
Target:  5'- -aACCGCuuGUugGCCaGCCGGGcacccuCGGCg -3'
miRNA:   3'- gaUGGCGggCG--UGG-CGGCCCac----GCCG- -5'
23326 3' -64.4 NC_005259.1 + 66642 0.69 0.231787
Target:  5'- -cACCGCUCGgauuGCUGCCGGucgGCGGUg -3'
miRNA:   3'- gaUGGCGGGCg---UGGCGGCCca-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 66260 0.72 0.140884
Target:  5'- -cGCgGCCCGC---GCCGGGcgGCGGCu -3'
miRNA:   3'- gaUGgCGGGCGuggCGGCCCa-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 65863 0.66 0.328932
Target:  5'- cCU-CCGUCUGCcCCGgUGGG-GCGGUc -3'
miRNA:   3'- -GAuGGCGGGCGuGGCgGCCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 64985 0.66 0.336379
Target:  5'- aCUGuuGCCCGUugCuGUCGGGUaagaucGUGGa -3'
miRNA:   3'- -GAUggCGGGCGugG-CGGCCCA------CGCCg -5'
23326 3' -64.4 NC_005259.1 + 64782 0.66 0.359452
Target:  5'- -gGCgGCCCGCugCGaCUGGcUGUGuGCc -3'
miRNA:   3'- gaUGgCGGGCGugGC-GGCCcACGC-CG- -5'
23326 3' -64.4 NC_005259.1 + 64441 0.71 0.164055
Target:  5'- -aGCUGCCgggGCGCUGCCcuuGGG-GCGGCg -3'
miRNA:   3'- gaUGGCGGg--CGUGGCGG---CCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 63168 0.74 0.098046
Target:  5'- -aGCCGCCgcaGCGCCGCCGaGGUGaucGCa -3'
miRNA:   3'- gaUGGCGGg--CGUGGCGGC-CCACgc-CG- -5'
23326 3' -64.4 NC_005259.1 + 62156 0.66 0.367385
Target:  5'- -gGCCGCa-GCACCuCgGGGUGC-GCg -3'
miRNA:   3'- gaUGGCGggCGUGGcGgCCCACGcCG- -5'
23326 3' -64.4 NC_005259.1 + 61383 0.66 0.343948
Target:  5'- gCUGCCacacGCCCGaUGCCGUCGGuGUccucGCGGg -3'
miRNA:   3'- -GAUGG----CGGGC-GUGGCGGCC-CA----CGCCg -5'
23326 3' -64.4 NC_005259.1 + 60365 0.69 0.215524
Target:  5'- cCUGCCcgaaauCCCGCcaAUCGCCGGacaGCGGCg -3'
miRNA:   3'- -GAUGGc-----GGGCG--UGGCGGCCca-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 60279 0.67 0.314404
Target:  5'- -cGCUGCCgGgcggcCAUCGUCGucGGUGCGGCc -3'
miRNA:   3'- gaUGGCGGgC-----GUGGCGGC--CCACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 53720 0.67 0.28682
Target:  5'- -cACCGCgCCGCugauggugaugUCGCCGGGUGUccacucGGUg -3'
miRNA:   3'- gaUGGCG-GGCGu----------GGCGGCCCACG------CCG- -5'
23326 3' -64.4 NC_005259.1 + 53250 0.66 0.328932
Target:  5'- -cGCCGacaCCGuCGCCGCCGcugucgccGGUGCcGCc -3'
miRNA:   3'- gaUGGCg--GGC-GUGGCGGC--------CCACGcCG- -5'
23326 3' -64.4 NC_005259.1 + 53181 0.67 0.293533
Target:  5'- -cACCG-CCGC-CCGUCGcGGUGUccccGGCg -3'
miRNA:   3'- gaUGGCgGGCGuGGCGGC-CCACG----CCG- -5'
23326 3' -64.4 NC_005259.1 + 52473 0.69 0.237434
Target:  5'- -cACCGCCCGCGaauaCGUCGaG-GCGGUc -3'
miRNA:   3'- gaUGGCGGGCGUg---GCGGCcCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 52245 0.66 0.328932
Target:  5'- aCUACCGCCCG-GCCccucucagggggGCCGGGcagacaggacCGGCc -3'
miRNA:   3'- -GAUGGCGGGCgUGG------------CGGCCCac--------GCCG- -5'
23326 3' -64.4 NC_005259.1 + 52136 0.66 0.343948
Target:  5'- -cGCCGUCCgGCACCucGCCGaGGcagGCaGCg -3'
miRNA:   3'- gaUGGCGGG-CGUGG--CGGC-CCa--CGcCG- -5'
23326 3' -64.4 NC_005259.1 + 51661 0.68 0.261178
Target:  5'- uUGCCGCgCGgGCgCGUCGGGcacggGCGcGCg -3'
miRNA:   3'- gAUGGCGgGCgUG-GCGGCCCa----CGC-CG- -5'
23326 3' -64.4 NC_005259.1 + 51113 0.68 0.241455
Target:  5'- --uCUGUCCGgcaggccaucagauCACCGUCGGG-GCGGCc -3'
miRNA:   3'- gauGGCGGGC--------------GUGGCGGCCCaCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.