miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23329 3' -53.1 NC_005259.1 + 62938 0.66 0.918342
Target:  5'- -gCGgcUCGCGcuGCUGcCgGGCACCGc -3'
miRNA:   3'- ggGCaaAGCGCu-UGACaGgCUGUGGC- -5'
23329 3' -53.1 NC_005259.1 + 1692 0.66 0.90584
Target:  5'- gCCCGcaagCGCGAACUcaagcgCCGccuCGCCGa -3'
miRNA:   3'- -GGGCaaa-GCGCUUGAca----GGCu--GUGGC- -5'
23329 3' -53.1 NC_005259.1 + 6483 0.66 0.90584
Target:  5'- aCCCGcucaCGCGGguacuGCUGgcccacaucgaCCGACGCCGu -3'
miRNA:   3'- -GGGCaaa-GCGCU-----UGACa----------GGCUGUGGC- -5'
23329 3' -53.1 NC_005259.1 + 153 0.66 0.90584
Target:  5'- aCUGggcUCGCccgGCgggGUCCGGCACCa -3'
miRNA:   3'- gGGCaa-AGCGcu-UGa--CAGGCUGUGGc -5'
23329 3' -53.1 NC_005259.1 + 58575 0.66 0.90584
Target:  5'- gCCGgaUCGCGGcgcgGCUG-CCGG-GCCGg -3'
miRNA:   3'- gGGCaaAGCGCU----UGACaGGCUgUGGC- -5'
23329 3' -53.1 NC_005259.1 + 18304 0.66 0.899198
Target:  5'- gCCGUUcUGCccGgUGUgCGACACCGa -3'
miRNA:   3'- gGGCAAaGCGcuUgACAgGCUGUGGC- -5'
23329 3' -53.1 NC_005259.1 + 60705 0.66 0.899198
Target:  5'- aCCaaagcaCGCGAugUGUCCGAauauCCGg -3'
miRNA:   3'- -GGgcaaa-GCGCUugACAGGCUgu--GGC- -5'
23329 3' -53.1 NC_005259.1 + 10493 0.66 0.899198
Target:  5'- gUCGUggUUGUugGggUUGUCCGGCACgGg -3'
miRNA:   3'- gGGCAa-AGCG--CuuGACAGGCUGUGgC- -5'
23329 3' -53.1 NC_005259.1 + 66162 0.66 0.899198
Target:  5'- uCCUGUgugCGCGcauGCUcaUCGGCACCGc -3'
miRNA:   3'- -GGGCAaa-GCGCu--UGAcaGGCUGUGGC- -5'
23329 3' -53.1 NC_005259.1 + 13541 0.66 0.8923
Target:  5'- aCCaagcagUUCGCGAugUGgcccgCCGACcCCGc -3'
miRNA:   3'- -GGgca---AAGCGCUugACa----GGCUGuGGC- -5'
23329 3' -53.1 NC_005259.1 + 36131 0.67 0.885149
Target:  5'- --aGUUgggcCGcCGGGCUGUCCGuCGCCa -3'
miRNA:   3'- gggCAAa---GC-GCUUGACAGGCuGUGGc -5'
23329 3' -53.1 NC_005259.1 + 30244 0.67 0.87775
Target:  5'- aCCCGUga-GCGGAUcugGUUCGACugacaugcACCGg -3'
miRNA:   3'- -GGGCAaagCGCUUGa--CAGGCUG--------UGGC- -5'
23329 3' -53.1 NC_005259.1 + 21696 0.67 0.862232
Target:  5'- aUCCGUUUCGaGGACggGUCaGACgACCGc -3'
miRNA:   3'- -GGGCAAAGCgCUUGa-CAGgCUG-UGGC- -5'
23329 3' -53.1 NC_005259.1 + 26123 0.67 0.845794
Target:  5'- gCCGccggUCGCcg---GUCCGACGCCGc -3'
miRNA:   3'- gGGCaa--AGCGcuugaCAGGCUGUGGC- -5'
23329 3' -53.1 NC_005259.1 + 1893 0.67 0.84495
Target:  5'- gCCGagaucgCGCGAGCUG-CCGaggaagcGCGCCGc -3'
miRNA:   3'- gGGCaaa---GCGCUUGACaGGC-------UGUGGC- -5'
23329 3' -53.1 NC_005259.1 + 11861 0.68 0.83725
Target:  5'- aCCCGUcg-GCGAACgUGaCCGccGCACCGu -3'
miRNA:   3'- -GGGCAaagCGCUUG-ACaGGC--UGUGGC- -5'
23329 3' -53.1 NC_005259.1 + 46841 0.68 0.81955
Target:  5'- cCCCG----GCGAGCUGcCCGAguCCGc -3'
miRNA:   3'- -GGGCaaagCGCUUGACaGGCUguGGC- -5'
23329 3' -53.1 NC_005259.1 + 6667 0.68 0.810413
Target:  5'- gUCCGUgacgCGCGAGCUGcCCGcuuCCa -3'
miRNA:   3'- -GGGCAaa--GCGCUUGACaGGCuguGGc -5'
23329 3' -53.1 NC_005259.1 + 44249 0.68 0.801097
Target:  5'- gCCCGcg-CGCGAGaaGUCggCGACAUCGa -3'
miRNA:   3'- -GGGCaaaGCGCUUgaCAG--GCUGUGGC- -5'
23329 3' -53.1 NC_005259.1 + 20816 0.69 0.752182
Target:  5'- uCCCG--UCGCGGcgcaccaagGCUgaccgugaGUCCGACGCCu -3'
miRNA:   3'- -GGGCaaAGCGCU---------UGA--------CAGGCUGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.