Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23330 | 5' | -54.8 | NC_005259.1 | + | 46276 | 0.75 | 0.330272 |
Target: 5'- uGcgCGAGGUucUGCaaCAGCGGGgCCGCCg -3' miRNA: 3'- gCuaGUUCUA--ACG--GUCGCCCaGGCGG- -5' |
|||||||
23330 | 5' | -54.8 | NC_005259.1 | + | 66491 | 0.75 | 0.299773 |
Target: 5'- uCGAUCAugGGAUuuccuuccUGUCGGCGGGgcggucCCGCCu -3' miRNA: 3'- -GCUAGU--UCUA--------ACGGUCGCCCa-----GGCGG- -5' |
|||||||
23330 | 5' | -54.8 | NC_005259.1 | + | 58283 | 0.77 | 0.251729 |
Target: 5'- aGAUCAGGuucgcgagGCCAGCGGauaCCGCCa -3' miRNA: 3'- gCUAGUUCuaa-----CGGUCGCCca-GGCGG- -5' |
|||||||
23330 | 5' | -54.8 | NC_005259.1 | + | 9983 | 0.78 | 0.215758 |
Target: 5'- cCGGUCGAGGUgGCCAGcCGGGgacugaUCCGCg -3' miRNA: 3'- -GCUAGUUCUAaCGGUC-GCCC------AGGCGg -5' |
|||||||
23330 | 5' | -54.8 | NC_005259.1 | + | 6619 | 1.11 | 0.001144 |
Target: 5'- uCGAUCAAGAUUGCCAGCGGGUCCGCCc -3' miRNA: 3'- -GCUAGUUCUAACGGUCGCCCAGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home