miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23331 5' -59.9 NC_005259.1 + 6422 1.13 0.00029
Target:  5'- uGGCCCGACCUCGCCGAUGUCGGCACCg -3'
miRNA:   3'- -CCGGGCUGGAGCGGCUACAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 60203 0.89 0.016091
Target:  5'- gGGCCaCGAUCUCGCCGAUcucGUCGGCGCUg -3'
miRNA:   3'- -CCGG-GCUGGAGCGGCUA---CAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 2225 0.86 0.027308
Target:  5'- cGCCCGGCCUCGCCauuUGUCGGCgacaGCCg -3'
miRNA:   3'- cCGGGCUGGAGCGGcu-ACAGCCG----UGG- -5'
23331 5' -59.9 NC_005259.1 + 22929 0.8 0.071447
Target:  5'- uGCUCGACCUCGCCGG-GUCaucGCGCCg -3'
miRNA:   3'- cCGGGCUGGAGCGGCUaCAGc--CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 32995 0.78 0.098686
Target:  5'- gGGUgCCG-CCaCGcCCGAUGUCGGCACCa -3'
miRNA:   3'- -CCG-GGCuGGaGC-GGCUACAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 31120 0.78 0.101354
Target:  5'- cGCCCGAUgUCGCCGAUGaUCGGgAUg -3'
miRNA:   3'- cCGGGCUGgAGCGGCUAC-AGCCgUGg -5'
23331 5' -59.9 NC_005259.1 + 41843 0.77 0.116975
Target:  5'- cGGCUCGACCUCGaCGGUGUCccacucgacgggcaGCACCg -3'
miRNA:   3'- -CCGGGCUGGAGCgGCUACAGc-------------CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 22548 0.77 0.128608
Target:  5'- aGUCCGACCUCGCCGAgGUCauGGaagcCGCCa -3'
miRNA:   3'- cCGGGCUGGAGCGGCUaCAG--CC----GUGG- -5'
23331 5' -59.9 NC_005259.1 + 9554 0.77 0.128608
Target:  5'- uGCCCGGCCUCGaCCGc-GUCGGCGa- -3'
miRNA:   3'- cCGGGCUGGAGC-GGCuaCAGCCGUgg -5'
23331 5' -59.9 NC_005259.1 + 10943 0.77 0.132025
Target:  5'- cGGUgUCGACCUCGUCGGUGUCGGU-CUg -3'
miRNA:   3'- -CCG-GGCUGGAGCGGCUACAGCCGuGG- -5'
23331 5' -59.9 NC_005259.1 + 45498 0.76 0.135525
Target:  5'- uGGCCUuggucgcuguGGCCaccgCGCCGGUGUUGGcCGCCg -3'
miRNA:   3'- -CCGGG----------CUGGa---GCGGCUACAGCC-GUGG- -5'
23331 5' -59.9 NC_005259.1 + 44386 0.76 0.154336
Target:  5'- cGCCCauGAUgUCGCCGAgcacGUCGGUGCCc -3'
miRNA:   3'- cCGGG--CUGgAGCGGCUa---CAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 58597 0.76 0.150393
Target:  5'- gGGCCgGaucuuuucgagcGCCUgGCUGAUGUCGGCgaaACCg -3'
miRNA:   3'- -CCGGgC------------UGGAgCGGCUACAGCCG---UGG- -5'
23331 5' -59.9 NC_005259.1 + 30825 0.75 0.162502
Target:  5'- aGUCCGGCg-CGCCGAgGUCGGCaACCu -3'
miRNA:   3'- cCGGGCUGgaGCGGCUaCAGCCG-UGG- -5'
23331 5' -59.9 NC_005259.1 + 52765 0.75 0.171056
Target:  5'- --aUCGAgCUCGUCGGUGUCGGCAgCg -3'
miRNA:   3'- ccgGGCUgGAGCGGCUACAGCCGUgG- -5'
23331 5' -59.9 NC_005259.1 + 9723 0.75 0.18001
Target:  5'- gGGCCgguCGAgCUCGCCGAUGUucCGGUcauccACCa -3'
miRNA:   3'- -CCGG---GCUgGAGCGGCUACA--GCCG-----UGG- -5'
23331 5' -59.9 NC_005259.1 + 67190 0.75 0.18001
Target:  5'- uGCCCGccucgucucCCUCGCCGcUGUCGGCggggucgauGCCg -3'
miRNA:   3'- cCGGGCu--------GGAGCGGCuACAGCCG---------UGG- -5'
23331 5' -59.9 NC_005259.1 + 4335 0.74 0.18464
Target:  5'- uGCCgGACCUCGUCGcgGUgaUGaGCGCCg -3'
miRNA:   3'- cCGGgCUGGAGCGGCuaCA--GC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 40134 0.74 0.18464
Target:  5'- uGGCgggCGAgCUCGCCGucgguUGUCGGUGCCc -3'
miRNA:   3'- -CCGg--GCUgGAGCGGCu----ACAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 46174 0.74 0.18464
Target:  5'- uGCCCG-CCgggcgCGUCGAUGUUgaugGGCACCu -3'
miRNA:   3'- cCGGGCuGGa----GCGGCUACAG----CCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.