miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23331 5' -59.9 NC_005259.1 + 41073 0.66 0.545188
Target:  5'- cGGCUCGAUgUCacgcaGCCGGUcguaGUCGGCGg- -3'
miRNA:   3'- -CCGGGCUGgAG-----CGGCUA----CAGCCGUgg -5'
23331 5' -59.9 NC_005259.1 + 44785 0.66 0.565466
Target:  5'- cGGUCgagaacaGACgCUCGCCGGUGgccUGGC-CCu -3'
miRNA:   3'- -CCGGg------CUG-GAGCGGCUACa--GCCGuGG- -5'
23331 5' -59.9 NC_005259.1 + 24327 0.66 0.549226
Target:  5'- uGGUCCGGCCUcacgcgcuggccuacCGCCGgGUGcUCGcaCACCg -3'
miRNA:   3'- -CCGGGCUGGA---------------GCGGC-UAC-AGCc-GUGG- -5'
23331 5' -59.9 NC_005259.1 + 42479 0.66 0.545188
Target:  5'- aGGCCCGGCCcguagaGCCGugacccGUCcGGCggugugGCCa -3'
miRNA:   3'- -CCGGGCUGGag----CGGCua----CAG-CCG------UGG- -5'
23331 5' -59.9 NC_005259.1 + 26913 0.66 0.545188
Target:  5'- gGGCCgGGuuucuugcCCUCGUgGAUcUCGGCAUa -3'
miRNA:   3'- -CCGGgCU--------GGAGCGgCUAcAGCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 67105 0.66 0.574656
Target:  5'- uGGUCCGagguguacuGCC-CGCUGcgGUCGugcgugaGCACCg -3'
miRNA:   3'- -CCGGGC---------UGGaGCGGCuaCAGC-------CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 9088 0.66 0.5553
Target:  5'- aGGCCCGuuGCC-CGCCGAgggCGGggaACUc -3'
miRNA:   3'- -CCGGGC--UGGaGCGGCUacaGCCg--UGG- -5'
23331 5' -59.9 NC_005259.1 + 37641 0.66 0.5553
Target:  5'- uGCCCGAugaCCgcaccgcCGCCGccGcCGGUGCCg -3'
miRNA:   3'- cCGGGCU---GGa------GCGGCuaCaGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 41754 0.66 0.545188
Target:  5'- cGCUCGACCUCGCagccuugcgCGAacaacacCGGCAUCg -3'
miRNA:   3'- cCGGGCUGGAGCG---------GCUaca----GCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 36210 0.66 0.545188
Target:  5'- uGCUCGACa--GCgCGAUGcCGaGCACCu -3'
miRNA:   3'- cCGGGCUGgagCG-GCUACaGC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 59488 0.66 0.565466
Target:  5'- uGGCCCGAUa--GCCGAgagUGUCacCGCCc -3'
miRNA:   3'- -CCGGGCUGgagCGGCU---ACAGccGUGG- -5'
23331 5' -59.9 NC_005259.1 + 26135 0.66 0.5553
Target:  5'- cGGUCCGACgC-CGCCGAgGcCGaGCAgCCc -3'
miRNA:   3'- -CCGGGCUG-GaGCGGCUaCaGC-CGU-GG- -5'
23331 5' -59.9 NC_005259.1 + 45165 0.66 0.564447
Target:  5'- cGCCCuuGGCCUuguugcgCGCCGAgGUCaGCGCg -3'
miRNA:   3'- cCGGG--CUGGA-------GCGGCUaCAGcCGUGg -5'
23331 5' -59.9 NC_005259.1 + 6278 0.66 0.5553
Target:  5'- cGCCU-ACCUCGUgguCGAgugGUgCGGUACCg -3'
miRNA:   3'- cCGGGcUGGAGCG---GCUa--CA-GCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 46552 0.66 0.596222
Target:  5'- uGGUcgCCGACCgCGCCuAUGgucgCGGCgucgACCg -3'
miRNA:   3'- -CCG--GGCUGGaGCGGcUACa---GCCG----UGG- -5'
23331 5' -59.9 NC_005259.1 + 66258 0.66 0.565466
Target:  5'- aGCgCGGCCcgCGCCGGgcggCGGCucacGCCg -3'
miRNA:   3'- cCGgGCUGGa-GCGGCUaca-GCCG----UGG- -5'
23331 5' -59.9 NC_005259.1 + 64752 0.66 0.5553
Target:  5'- cGCCCaccgcGCCUCGCgaCGGUGcgccUCGGCgGCCc -3'
miRNA:   3'- cCGGGc----UGGAGCG--GCUAC----AGCCG-UGG- -5'
23331 5' -59.9 NC_005259.1 + 7411 0.66 0.565466
Target:  5'- cGGCau--CCUCGUCGccGUCGGCgguGCCc -3'
miRNA:   3'- -CCGggcuGGAGCGGCuaCAGCCG---UGG- -5'
23331 5' -59.9 NC_005259.1 + 48278 0.66 0.565466
Target:  5'- cGGUugUCGACCUUGCgGuUGUC-GUACCg -3'
miRNA:   3'- -CCG--GGCUGGAGCGgCuACAGcCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 26641 0.66 0.565466
Target:  5'- uGGCCUGGCgUgCGCuCGGcagGuUCGGCGCa -3'
miRNA:   3'- -CCGGGCUGgA-GCG-GCUa--C-AGCCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.