miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23331 5' -59.9 NC_005259.1 + 3833 0.66 0.595192
Target:  5'- gGGCCaCGAcgaugucCCUCGCaccguCGAcgccgGUCGaGCGCCu -3'
miRNA:   3'- -CCGG-GCU-------GGAGCG-----GCUa----CAGC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 45632 0.66 0.575679
Target:  5'- gGGCCgGGCagcgCGCCGGUGcCGccgugaaCACCg -3'
miRNA:   3'- -CCGGgCUGga--GCGGCUACaGCc------GUGG- -5'
23331 5' -59.9 NC_005259.1 + 48278 0.66 0.565466
Target:  5'- cGGUugUCGACCUUGCgGuUGUC-GUACCg -3'
miRNA:   3'- -CCG--GGCUGGAGCGgCuACAGcCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 37641 0.66 0.5553
Target:  5'- uGCCCGAugaCCgcaccgcCGCCGccGcCGGUGCCg -3'
miRNA:   3'- cCGGGCU---GGa------GCGGCuaCaGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 59488 0.66 0.565466
Target:  5'- uGGCCCGAUa--GCCGAgagUGUCacCGCCc -3'
miRNA:   3'- -CCGGGCUGgagCGGCU---ACAGccGUGG- -5'
23331 5' -59.9 NC_005259.1 + 7411 0.66 0.565466
Target:  5'- cGGCau--CCUCGUCGccGUCGGCgguGCCc -3'
miRNA:   3'- -CCGggcuGGAGCGGCuaCAGCCG---UGG- -5'
23331 5' -59.9 NC_005259.1 + 9088 0.66 0.5553
Target:  5'- aGGCCCGuuGCC-CGCCGAgggCGGggaACUc -3'
miRNA:   3'- -CCGGGC--UGGaGCGGCUacaGCCg--UGG- -5'
23331 5' -59.9 NC_005259.1 + 64752 0.66 0.5553
Target:  5'- cGCCCaccgcGCCUCGCgaCGGUGcgccUCGGCgGCCc -3'
miRNA:   3'- cCGGGc----UGGAGCG--GCUAC----AGCCG-UGG- -5'
23331 5' -59.9 NC_005259.1 + 36210 0.66 0.545188
Target:  5'- uGCUCGACa--GCgCGAUGcCGaGCACCu -3'
miRNA:   3'- cCGGGCUGgagCG-GCUACaGC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 33308 0.67 0.535137
Target:  5'- cGGCUCGAUCcCGCCGucggCGGuCACg -3'
miRNA:   3'- -CCGGGCUGGaGCGGCuacaGCC-GUGg -5'
23331 5' -59.9 NC_005259.1 + 50776 0.67 0.535137
Target:  5'- -cCUCGGCCUCGCgcUGGUaGUCGG-ACCa -3'
miRNA:   3'- ccGGGCUGGAGCG--GCUA-CAGCCgUGG- -5'
23331 5' -59.9 NC_005259.1 + 58145 0.67 0.525151
Target:  5'- aGCCgGAUCUCaUCGAacucGUCGGCGCa -3'
miRNA:   3'- cCGGgCUGGAGcGGCUa---CAGCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 55885 0.67 0.515237
Target:  5'- cGcCCCGACCUcgggggucgCGCCGggGUCgcuGGCcagACCg -3'
miRNA:   3'- cC-GGGCUGGA---------GCGGCuaCAG---CCG---UGG- -5'
23331 5' -59.9 NC_005259.1 + 9818 0.67 0.485974
Target:  5'- cGCCCGcACC--GCCGGgugCGGCGCUg -3'
miRNA:   3'- cCGGGC-UGGagCGGCUacaGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 53531 0.67 0.485974
Target:  5'- cGGCaCGGgCUCGgugcCCGGUGUCGGC-UCg -3'
miRNA:   3'- -CCGgGCUgGAGC----GGCUACAGCCGuGG- -5'
23331 5' -59.9 NC_005259.1 + 57194 0.67 0.492733
Target:  5'- cGGCCCGcgaACCUCGacgccguugaaaaaCCGGUuGUCGGggUCg -3'
miRNA:   3'- -CCGGGC---UGGAGC--------------GGCUA-CAGCCguGG- -5'
23331 5' -59.9 NC_005259.1 + 18502 0.67 0.535137
Target:  5'- cGCCgaCGACCUcagcgaucugccCGCCGAUuUCGGCAa- -3'
miRNA:   3'- cCGG--GCUGGA------------GCGGCUAcAGCCGUgg -5'
23331 5' -59.9 NC_005259.1 + 64548 0.67 0.50442
Target:  5'- aGCCgCGuCCUCGaucucgauuuccUCGGUGUCGGCgaaacggGCCa -3'
miRNA:   3'- cCGG-GCuGGAGC------------GGCUACAGCCG-------UGG- -5'
23331 5' -59.9 NC_005259.1 + 49679 0.67 0.50442
Target:  5'- cGGCCugguaguCGGCCUCGCgcuCGcUGUCGGUgagauCCg -3'
miRNA:   3'- -CCGG-------GCUGGAGCG---GCuACAGCCGu----GG- -5'
23331 5' -59.9 NC_005259.1 + 52949 0.67 0.525151
Target:  5'- cGCCCGuaagcACC-CGCCGcUGccCGGCugCa -3'
miRNA:   3'- cCGGGC-----UGGaGCGGCuACa-GCCGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.