miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23331 5' -59.9 NC_005259.1 + 11089 0.74 0.194219
Target:  5'- cGGCUCGACCUCGCaGGUGUucuuguUGGUGCg -3'
miRNA:   3'- -CCGGGCUGGAGCGgCUACA------GCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 28944 0.74 0.199169
Target:  5'- cGGCaCGAUCcugcgccgcaUCGCCGAgGUCGGUGCCg -3'
miRNA:   3'- -CCGgGCUGG----------AGCGGCUaCAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 23896 0.74 0.201179
Target:  5'- cGCCCGAgCCgccgcgccCGCCGucgaaauacaacgGUCGGCACCa -3'
miRNA:   3'- cCGGGCU-GGa-------GCGGCua-----------CAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 13485 0.74 0.203718
Target:  5'- uGCCCGAcgaugucucggucCCUCGCCccGGucUGUCGGuCACCg -3'
miRNA:   3'- cCGGGCU-------------GGAGCGG--CU--ACAGCC-GUGG- -5'
23331 5' -59.9 NC_005259.1 + 64207 0.73 0.214683
Target:  5'- --gUCGACCUCGCCG--GUCGGCAgCCc -3'
miRNA:   3'- ccgGGCUGGAGCGGCuaCAGCCGU-GG- -5'
23331 5' -59.9 NC_005259.1 + 43187 0.73 0.214683
Target:  5'- cGGUaCCGACCUCGgcggCGAUGUCGaCGCCc -3'
miRNA:   3'- -CCG-GGCUGGAGCg---GCUACAGCcGUGG- -5'
23331 5' -59.9 NC_005259.1 + 67772 0.73 0.22008
Target:  5'- cGGCcaCCGACCaCGCgGugaccuUGUUGGCACCg -3'
miRNA:   3'- -CCG--GGCUGGaGCGgCu-----ACAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 58699 0.73 0.223927
Target:  5'- cGGCUCGucgccgccgccgucACCaUCGCCGGgggugucGUUGGCACCg -3'
miRNA:   3'- -CCGGGC--------------UGG-AGCGGCUa------CAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 44417 0.73 0.225593
Target:  5'- cGCCUGACCggcagCGCCGAUacCGGCcCCg -3'
miRNA:   3'- cCGGGCUGGa----GCGGCUAcaGCCGuGG- -5'
23331 5' -59.9 NC_005259.1 + 27375 0.73 0.231222
Target:  5'- uGCCCGGCaCggugaccggCGgCGGUGUCGGCAgCg -3'
miRNA:   3'- cCGGGCUG-Ga--------GCgGCUACAGCCGUgG- -5'
23331 5' -59.9 NC_005259.1 + 13406 0.73 0.231222
Target:  5'- cGCUCGGCCUUccugGCCGggGUCGcCGCCg -3'
miRNA:   3'- cCGGGCUGGAG----CGGCuaCAGCcGUGG- -5'
23331 5' -59.9 NC_005259.1 + 60930 0.73 0.231222
Target:  5'- aGCUCGGCCUUGgUGAUcGUCuGCACCa -3'
miRNA:   3'- cCGGGCUGGAGCgGCUA-CAGcCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 25839 0.73 0.236969
Target:  5'- gGGCCauACCUCGCgGAUGU-GGUACUc -3'
miRNA:   3'- -CCGGgcUGGAGCGgCUACAgCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 34014 0.73 0.236969
Target:  5'- cGGCuguauCCGGCCUCGgCGGcgugcGUCGGCGCg -3'
miRNA:   3'- -CCG-----GGCUGGAGCgGCUa----CAGCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 39573 0.73 0.236969
Target:  5'- cGGCCCGACCUCgauGCUGuugcuguggaucGUGUgggUGGUGCCa -3'
miRNA:   3'- -CCGGGCUGGAG---CGGC------------UACA---GCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 42623 0.73 0.245216
Target:  5'- aGCCCGAugucgcgcguaggcaCCUCGgccCCGAUGUgGGCgGCCa -3'
miRNA:   3'- cCGGGCU---------------GGAGC---GGCUACAgCCG-UGG- -5'
23331 5' -59.9 NC_005259.1 + 27824 0.72 0.248822
Target:  5'- uGGCUCGACUUCugcgcgagguagGCCGcgagGUCGcGCGCCg -3'
miRNA:   3'- -CCGGGCUGGAG------------CGGCua--CAGC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 31879 0.72 0.254931
Target:  5'- cGGUCgUGACCUCGCCGGUcucaaGgccCGGCGCg -3'
miRNA:   3'- -CCGG-GCUGGAGCGGCUA-----Ca--GCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 56412 0.72 0.263055
Target:  5'- uGCCCGGCC-CGCCGAgcucaagcagagcagCGaGCGCCg -3'
miRNA:   3'- cCGGGCUGGaGCGGCUaca------------GC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 36159 0.72 0.273341
Target:  5'- uGGCCacggugaCGACCUUGCCGAgGUCGaGaGCCu -3'
miRNA:   3'- -CCGG-------GCUGGAGCGGCUaCAGC-CgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.