miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23331 5' -59.9 NC_005259.1 + 6278 0.66 0.5553
Target:  5'- cGCCU-ACCUCGUgguCGAgugGUgCGGUACCg -3'
miRNA:   3'- cCGGGcUGGAGCG---GCUa--CA-GCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 64752 0.66 0.5553
Target:  5'- cGCCCaccgcGCCUCGCgaCGGUGcgccUCGGCgGCCc -3'
miRNA:   3'- cCGGGc----UGGAGCG--GCUAC----AGCCG-UGG- -5'
23331 5' -59.9 NC_005259.1 + 24327 0.66 0.549226
Target:  5'- uGGUCCGGCCUcacgcgcuggccuacCGCCGgGUGcUCGcaCACCg -3'
miRNA:   3'- -CCGGGCUGGA---------------GCGGC-UAC-AGCc-GUGG- -5'
23331 5' -59.9 NC_005259.1 + 42479 0.66 0.545188
Target:  5'- aGGCCCGGCCcguagaGCCGugacccGUCcGGCggugugGCCa -3'
miRNA:   3'- -CCGGGCUGGag----CGGCua----CAG-CCG------UGG- -5'
23331 5' -59.9 NC_005259.1 + 36210 0.66 0.545188
Target:  5'- uGCUCGACa--GCgCGAUGcCGaGCACCu -3'
miRNA:   3'- cCGGGCUGgagCG-GCUACaGC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 41073 0.66 0.545188
Target:  5'- cGGCUCGAUgUCacgcaGCCGGUcguaGUCGGCGg- -3'
miRNA:   3'- -CCGGGCUGgAG-----CGGCUA----CAGCCGUgg -5'
23331 5' -59.9 NC_005259.1 + 41754 0.66 0.545188
Target:  5'- cGCUCGACCUCGCagccuugcgCGAacaacacCGGCAUCg -3'
miRNA:   3'- cCGGGCUGGAGCG---------GCUaca----GCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 26763 0.66 0.545188
Target:  5'- -uCCUGACCgaugaugcCGCCGGUGccUCGGaaCACCa -3'
miRNA:   3'- ccGGGCUGGa-------GCGGCUAC--AGCC--GUGG- -5'
23331 5' -59.9 NC_005259.1 + 26913 0.66 0.545188
Target:  5'- gGGCCgGGuuucuugcCCUCGUgGAUcUCGGCAUa -3'
miRNA:   3'- -CCGGgCU--------GGAGCGgCUAcAGCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 50776 0.67 0.535137
Target:  5'- -cCUCGGCCUCGCgcUGGUaGUCGG-ACCa -3'
miRNA:   3'- ccGGGCUGGAGCG--GCUA-CAGCCgUGG- -5'
23331 5' -59.9 NC_005259.1 + 18502 0.67 0.535137
Target:  5'- cGCCgaCGACCUcagcgaucugccCGCCGAUuUCGGCAa- -3'
miRNA:   3'- cCGG--GCUGGA------------GCGGCUAcAGCCGUgg -5'
23331 5' -59.9 NC_005259.1 + 33308 0.67 0.535137
Target:  5'- cGGCUCGAUCcCGCCGucggCGGuCACg -3'
miRNA:   3'- -CCGGGCUGGaGCGGCuacaGCC-GUGg -5'
23331 5' -59.9 NC_005259.1 + 58145 0.67 0.525151
Target:  5'- aGCCgGAUCUCaUCGAacucGUCGGCGCa -3'
miRNA:   3'- cCGGgCUGGAGcGGCUa---CAGCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 52949 0.67 0.525151
Target:  5'- cGCCCGuaagcACC-CGCCGcUGccCGGCugCa -3'
miRNA:   3'- cCGGGC-----UGGaGCGGCuACa-GCCGugG- -5'
23331 5' -59.9 NC_005259.1 + 19434 0.67 0.525151
Target:  5'- cGCUCGACCUCGCCccga--GGCugUc -3'
miRNA:   3'- cCGGGCUGGAGCGGcuacagCCGugG- -5'
23331 5' -59.9 NC_005259.1 + 23472 0.67 0.525151
Target:  5'- gGGCCuCGGCaUUGUCGGUGcCGaCGCCa -3'
miRNA:   3'- -CCGG-GCUGgAGCGGCUACaGCcGUGG- -5'
23331 5' -59.9 NC_005259.1 + 55885 0.67 0.515237
Target:  5'- cGcCCCGACCUcgggggucgCGCCGggGUCgcuGGCcagACCg -3'
miRNA:   3'- cC-GGGCUGGA---------GCGGCuaCAG---CCG---UGG- -5'
23331 5' -59.9 NC_005259.1 + 3283 0.67 0.515237
Target:  5'- -uCCCGucgccGCCUCGCCGGUcccUCGGCGa- -3'
miRNA:   3'- ccGGGC-----UGGAGCGGCUAc--AGCCGUgg -5'
23331 5' -59.9 NC_005259.1 + 15303 0.67 0.515237
Target:  5'- --gCCGACCUCGCCGcccacgGUcucgacggCGGUACUg -3'
miRNA:   3'- ccgGGCUGGAGCGGCua----CA--------GCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 41490 0.67 0.515237
Target:  5'- aGCaCGACCUCGgCGGUGgcgGGCagACCg -3'
miRNA:   3'- cCGgGCUGGAGCgGCUACag-CCG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.