miRNA display CGI


Results 21 - 40 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23331 5' -59.9 NC_005259.1 + 9778 0.69 0.386352
Target:  5'- uGGCUCGACUUCuGcCCGGUGUgccCGcucGCGCCa -3'
miRNA:   3'- -CCGGGCUGGAG-C-GGCUACA---GC---CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 9818 0.67 0.485974
Target:  5'- cGCCCGcACC--GCCGGgugCGGCGCUg -3'
miRNA:   3'- cCGGGC-UGGagCGGCUacaGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 10645 0.71 0.308276
Target:  5'- aGCuuGGCCUCGCg---GUCGaGCGCCu -3'
miRNA:   3'- cCGggCUGGAGCGgcuaCAGC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 10943 0.77 0.132025
Target:  5'- cGGUgUCGACCUCGUCGGUGUCGGU-CUg -3'
miRNA:   3'- -CCG-GGCUGGAGCGGCUACAGCCGuGG- -5'
23331 5' -59.9 NC_005259.1 + 11089 0.74 0.194219
Target:  5'- cGGCUCGACCUCGCaGGUGUucuuguUGGUGCg -3'
miRNA:   3'- -CCGGGCUGGAGCGgCUACA------GCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 12359 0.67 0.505399
Target:  5'- --aCCGGCCUCGCgacCGAgguaGUCGGCGa- -3'
miRNA:   3'- ccgGGCUGGAGCG---GCUa---CAGCCGUgg -5'
23331 5' -59.9 NC_005259.1 + 13122 0.69 0.421032
Target:  5'- cGGCUaCGACCagCGCaCGGUGuUCGGCucgaucaugGCCa -3'
miRNA:   3'- -CCGG-GCUGGa-GCG-GCUAC-AGCCG---------UGG- -5'
23331 5' -59.9 NC_005259.1 + 13406 0.73 0.231222
Target:  5'- cGCUCGGCCUUccugGCCGggGUCGcCGCCg -3'
miRNA:   3'- cCGGGCUGGAG----CGGCuaCAGCcGUGG- -5'
23331 5' -59.9 NC_005259.1 + 13485 0.74 0.203718
Target:  5'- uGCCCGAcgaugucucggucCCUCGCCccGGucUGUCGGuCACCg -3'
miRNA:   3'- cCGGGCU-------------GGAGCGG--CU--ACAGCC-GUGG- -5'
23331 5' -59.9 NC_005259.1 + 13742 0.7 0.328109
Target:  5'- uGGCCCgcgagauaugccaaGACCUCGCCGAcgacgUGUucgaCGGCGa- -3'
miRNA:   3'- -CCGGG--------------CUGGAGCGGCU-----ACA----GCCGUgg -5'
23331 5' -59.9 NC_005259.1 + 14290 0.68 0.46691
Target:  5'- uGCCCaACCa--CCGAUGUCGGUGCg -3'
miRNA:   3'- cCGGGcUGGagcGGCUACAGCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 14485 0.68 0.457524
Target:  5'- uGGUCCGAUC-CGCUGc--UCGGUGCCc -3'
miRNA:   3'- -CCGGGCUGGaGCGGCuacAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 15303 0.67 0.515237
Target:  5'- --gCCGACCUCGCCGcccacgGUcucgacggCGGUACUg -3'
miRNA:   3'- ccgGGCUGGAGCGGCua----CA--------GCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 15355 0.66 0.585933
Target:  5'- uGGUCCaGuAUCUCGCCGAUcUgGGCgagcuGCCg -3'
miRNA:   3'- -CCGGG-C-UGGAGCGGCUAcAgCCG-----UGG- -5'
23331 5' -59.9 NC_005259.1 + 17495 0.7 0.35361
Target:  5'- gGGCaaggacggCGACCUUGCCGAUccgagcucGUgGGCACa -3'
miRNA:   3'- -CCGg-------GCUGGAGCGGCUA--------CAgCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 18502 0.67 0.535137
Target:  5'- cGCCgaCGACCUcagcgaucugccCGCCGAUuUCGGCAa- -3'
miRNA:   3'- cCGG--GCUGGA------------GCGGCUAcAGCCGUgg -5'
23331 5' -59.9 NC_005259.1 + 18709 0.68 0.457524
Target:  5'- cGGUCUGACCUCgaucaucggGCCGcc--CGGCAUCg -3'
miRNA:   3'- -CCGGGCUGGAG---------CGGCuacaGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 18837 0.69 0.394844
Target:  5'- uGCCCGGugagggUCUCGCCGGUGccgugcaaCGGUugCg -3'
miRNA:   3'- cCGGGCU------GGAGCGGCUACa-------GCCGugG- -5'
23331 5' -59.9 NC_005259.1 + 19434 0.67 0.525151
Target:  5'- cGCUCGACCUCGCCccga--GGCugUc -3'
miRNA:   3'- cCGGGCUGGAGCGGcuacagCCGugG- -5'
23331 5' -59.9 NC_005259.1 + 21961 0.71 0.294183
Target:  5'- aGGCgUGACCcgCGUgGGUGUCguucuccccaccGGCACCg -3'
miRNA:   3'- -CCGgGCUGGa-GCGgCUACAG------------CCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.