miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23331 5' -59.9 NC_005259.1 + 156 0.71 0.315513
Target:  5'- gGGCUCG-CC-CGgCGggGUcCGGCACCa -3'
miRNA:   3'- -CCGGGCuGGaGCgGCuaCA-GCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 2225 0.86 0.027308
Target:  5'- cGCCCGGCCUCGCCauuUGUCGGCgacaGCCg -3'
miRNA:   3'- cCGGGCUGGAGCGGcu-ACAGCCG----UGG- -5'
23331 5' -59.9 NC_005259.1 + 2283 0.66 0.575679
Target:  5'- cGCCCGGCUaUC-CCGGUuucugauacaGUCGGCAUUc -3'
miRNA:   3'- cCGGGCUGG-AGcGGCUA----------CAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 2621 0.71 0.322878
Target:  5'- uGGCacuaCCGcACCUCGCCGAacaagggcggUGUCgcgGGCACg -3'
miRNA:   3'- -CCG----GGC-UGGAGCGGCU----------ACAG---CCGUGg -5'
23331 5' -59.9 NC_005259.1 + 3171 0.69 0.403456
Target:  5'- uGCCCGGCgaugucaaggUCGUCGGUG-CGcGCACCa -3'
miRNA:   3'- cCGGGCUGg---------AGCGGCUACaGC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 3283 0.67 0.515237
Target:  5'- -uCCCGucgccGCCUCGCCGGUcccUCGGCGa- -3'
miRNA:   3'- ccGGGC-----UGGAGCGGCUAc--AGCCGUgg -5'
23331 5' -59.9 NC_005259.1 + 3833 0.66 0.595192
Target:  5'- gGGCCaCGAcgaugucCCUCGCaccguCGAcgccgGUCGaGCGCCu -3'
miRNA:   3'- -CCGG-GCU-------GGAGCG-----GCUa----CAGC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 4335 0.74 0.18464
Target:  5'- uGCCgGACCUCGUCGcgGUgaUGaGCGCCg -3'
miRNA:   3'- cCGGgCUGGAGCGGCuaCA--GC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 4548 0.7 0.366468
Target:  5'- uGCCCaGugCgggcacgaggucaCGCCGAUcGUCGGCACg -3'
miRNA:   3'- cCGGG-CugGa------------GCGGCUA-CAGCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 6278 0.66 0.5553
Target:  5'- cGCCU-ACCUCGUgguCGAgugGUgCGGUACCg -3'
miRNA:   3'- cCGGGcUGGAGCG---GCUa--CA-GCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 6422 1.13 0.00029
Target:  5'- uGGCCCGACCUCGCCGAUGUCGGCACCg -3'
miRNA:   3'- -CCGGGCUGGAGCGGCUACAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 6944 0.71 0.315513
Target:  5'- aGG-CCGAgCUCGCCGccGaCGGCAUCc -3'
miRNA:   3'- -CCgGGCUgGAGCGGCuaCaGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 7240 0.71 0.287327
Target:  5'- cGGCa--GCCgCGCCGGUGUCGaguGCGCCa -3'
miRNA:   3'- -CCGggcUGGaGCGGCUACAGC---CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 7411 0.66 0.565466
Target:  5'- cGGCau--CCUCGUCGccGUCGGCgguGCCc -3'
miRNA:   3'- -CCGggcuGGAGCGGCuaCAGCCG---UGG- -5'
23331 5' -59.9 NC_005259.1 + 7627 0.68 0.46033
Target:  5'- gGGCCgGACCuacaccgUCGCCGAguucgaccgccgucGUCGugaGCGCCc -3'
miRNA:   3'- -CCGGgCUGG-------AGCGGCUa-------------CAGC---CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 8188 0.68 0.476395
Target:  5'- uGGCCUG-CCguuuacgCGcCCGAUGUCgGGCAa- -3'
miRNA:   3'- -CCGGGCuGGa------GC-GGCUACAG-CCGUgg -5'
23331 5' -59.9 NC_005259.1 + 9088 0.66 0.5553
Target:  5'- aGGCCCGuuGCC-CGCCGAgggCGGggaACUc -3'
miRNA:   3'- -CCGGGC--UGGaGCGGCUacaGCCg--UGG- -5'
23331 5' -59.9 NC_005259.1 + 9314 0.69 0.412186
Target:  5'- aGCCgaugGAUCUCaCCGAUgaacgugucgagGUCGGCACCg -3'
miRNA:   3'- cCGGg---CUGGAGcGGCUA------------CAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 9554 0.77 0.128608
Target:  5'- uGCCCGGCCUCGaCCGc-GUCGGCGa- -3'
miRNA:   3'- cCGGGCUGGAGC-GGCuaCAGCCGUgg -5'
23331 5' -59.9 NC_005259.1 + 9723 0.75 0.18001
Target:  5'- gGGCCgguCGAgCUCGCCGAUGUucCGGUcauccACCa -3'
miRNA:   3'- -CCGG---GCUgGAGCGGCUACA--GCCG-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.