miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23331 5' -59.9 NC_005259.1 + 67819 0.69 0.421923
Target:  5'- aGCCCGAUCUUGuccucgaccggcagcCCGGUGagcgggucgaccaaUCGGUGCCg -3'
miRNA:   3'- cCGGGCUGGAGC---------------GGCUAC--------------AGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 67772 0.73 0.22008
Target:  5'- cGGCcaCCGACCaCGCgGugaccuUGUUGGCACCg -3'
miRNA:   3'- -CCG--GGCUGGaGCGgCu-----ACAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 67190 0.75 0.18001
Target:  5'- uGCCCGccucgucucCCUCGCCGcUGUCGGCggggucgauGCCg -3'
miRNA:   3'- cCGGGCu--------GGAGCGGCuACAGCCG---------UGG- -5'
23331 5' -59.9 NC_005259.1 + 67105 0.66 0.574656
Target:  5'- uGGUCCGagguguacuGCC-CGCUGcgGUCGugcgugaGCACCg -3'
miRNA:   3'- -CCGGGC---------UGGaGCGGCuaCAGC-------CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 66258 0.66 0.565466
Target:  5'- aGCgCGGCCcgCGCCGGgcggCGGCucacGCCg -3'
miRNA:   3'- cCGgGCUGGa-GCGGCUaca-GCCG----UGG- -5'
23331 5' -59.9 NC_005259.1 + 65738 0.67 0.494673
Target:  5'- gGGgUCGACCcauuggaUCGCCGAguagUGGUACCc -3'
miRNA:   3'- -CCgGGCUGG-------AGCGGCUaca-GCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 65226 0.69 0.377981
Target:  5'- cGGCCUGACCUCGUCGuca-UGGagACCc -3'
miRNA:   3'- -CCGGGCUGGAGCGGCuacaGCCg-UGG- -5'
23331 5' -59.9 NC_005259.1 + 65164 0.71 0.294183
Target:  5'- gGGCCaUGGCC-CGCCGG-GUCaaGGCGCUg -3'
miRNA:   3'- -CCGG-GCUGGaGCGGCUaCAG--CCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 64752 0.66 0.5553
Target:  5'- cGCCCaccgcGCCUCGCgaCGGUGcgccUCGGCgGCCc -3'
miRNA:   3'- cCGGGc----UGGAGCG--GCUAC----AGCCG-UGG- -5'
23331 5' -59.9 NC_005259.1 + 64548 0.67 0.50442
Target:  5'- aGCCgCGuCCUCGaucucgauuuccUCGGUGUCGGCgaaacggGCCa -3'
miRNA:   3'- cCGG-GCuGGAGC------------GGCUACAGCCG-------UGG- -5'
23331 5' -59.9 NC_005259.1 + 64207 0.73 0.214683
Target:  5'- --gUCGACCUCGCCG--GUCGGCAgCCc -3'
miRNA:   3'- ccgGGCUGGAGCGGCuaCAGCCGU-GG- -5'
23331 5' -59.9 NC_005259.1 + 63680 0.68 0.44824
Target:  5'- gGGCaCCGGCg-CGCCGggGaUCuGCGCCu -3'
miRNA:   3'- -CCG-GGCUGgaGCGGCuaC-AGcCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 62675 0.69 0.386352
Target:  5'- aGGCCaCGACCUCGUccucgagugCGGUGUcccaucCGGCgAUCa -3'
miRNA:   3'- -CCGG-GCUGGAGCG---------GCUACA------GCCG-UGG- -5'
23331 5' -59.9 NC_005259.1 + 62572 0.69 0.386352
Target:  5'- cGGCCacaucagaCGACCUCGCCcucGAUGagaGGCugUg -3'
miRNA:   3'- -CCGG--------GCUGGAGCGG---CUACag-CCGugG- -5'
23331 5' -59.9 NC_005259.1 + 62052 0.67 0.505399
Target:  5'- cGGCCCG--CUCGCgcaGAUauggGUCGGCAUa -3'
miRNA:   3'- -CCGGGCugGAGCGg--CUA----CAGCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 61392 0.7 0.369733
Target:  5'- cGCCCGAUgcCGUCGGUGUCcucgcgGGCACg -3'
miRNA:   3'- cCGGGCUGgaGCGGCUACAG------CCGUGg -5'
23331 5' -59.9 NC_005259.1 + 60930 0.73 0.231222
Target:  5'- aGCUCGGCCUUGgUGAUcGUCuGCACCa -3'
miRNA:   3'- cCGGGCUGGAGCgGCUA-CAGcCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 60530 0.7 0.35361
Target:  5'- uGGCCgGGCCgggacgcaGCCGcucGUCGGCAUg -3'
miRNA:   3'- -CCGGgCUGGag------CGGCua-CAGCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 60495 0.69 0.393989
Target:  5'- cGCCCaGCacgCGCCGGUGUUGucguaguGCGCCa -3'
miRNA:   3'- cCGGGcUGga-GCGGCUACAGC-------CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 60203 0.89 0.016091
Target:  5'- gGGCCaCGAUCUCGCCGAUcucGUCGGCGCUg -3'
miRNA:   3'- -CCGG-GCUGGAGCGGCUA---CAGCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.