Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23333 | 5' | -51 | NC_005259.1 | + | 5877 | 1.1 | 0.003183 |
Target: 5'- gAGCACAUCAACGAUCAUGCCGUCGACc -3' miRNA: 3'- -UCGUGUAGUUGCUAGUACGGCAGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 58911 | 0.84 | 0.163185 |
Target: 5'- gGGCuCGUCGGCGGUCuUGUCGUCGGCg -3' miRNA: 3'- -UCGuGUAGUUGCUAGuACGGCAGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 11330 | 0.8 | 0.251827 |
Target: 5'- cAGCuCGUCGuCGGUCAUGCCGUUGAg -3' miRNA: 3'- -UCGuGUAGUuGCUAGUACGGCAGCUg -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 22000 | 0.75 | 0.504495 |
Target: 5'- cGGCAaGUCGACGGUCAucggucgcacUGCCGUCaACg -3' miRNA: 3'- -UCGUgUAGUUGCUAGU----------ACGGCAGcUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 40597 | 0.74 | 0.569617 |
Target: 5'- cAGCACAUCGuuguaGGUCuggcUGCCGUCGcGCa -3' miRNA: 3'- -UCGUGUAGUug---CUAGu---ACGGCAGC-UG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 47162 | 0.73 | 0.614183 |
Target: 5'- cAGCAgAUCAccguagcgGCGAaggUCggcgGUGCCGUCGGCg -3' miRNA: 3'- -UCGUgUAGU--------UGCU---AG----UACGGCAGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 9154 | 0.73 | 0.625389 |
Target: 5'- uGCcCGUCGACGG-CAUGCCGgUGGCa -3' miRNA: 3'- uCGuGUAGUUGCUaGUACGGCaGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 57662 | 0.71 | 0.69238 |
Target: 5'- cAGCACGUCGACcguGUCcgGCCaaUCGACc -3' miRNA: 3'- -UCGUGUAGUUGc--UAGuaCGGc-AGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 49743 | 0.71 | 0.725215 |
Target: 5'- gAGCugcuCGUCAgugACGGUCuUGCCGUCuGCg -3' miRNA: 3'- -UCGu---GUAGU---UGCUAGuACGGCAGcUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 67689 | 0.71 | 0.735983 |
Target: 5'- cGGguCAUCAAUGAUCAUGagaUCGGCg -3' miRNA: 3'- -UCguGUAGUUGCUAGUACggcAGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 54740 | 0.71 | 0.735983 |
Target: 5'- aGGCugcCGaCAGCGAUCAgGCCGcCGACc -3' miRNA: 3'- -UCGu--GUaGUUGCUAGUaCGGCaGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 52768 | 0.7 | 0.757183 |
Target: 5'- gAGCuCGUCggUG-UCggcagcguGUGCCGUCGACa -3' miRNA: 3'- -UCGuGUAGuuGCuAG--------UACGGCAGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 9489 | 0.7 | 0.76759 |
Target: 5'- cGCGCAUCGagGCGAggaaCGUGCgcucgucgcgcgCGUCGACc -3' miRNA: 3'- uCGUGUAGU--UGCUa---GUACG------------GCAGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 33302 | 0.7 | 0.76759 |
Target: 5'- cGGCuGCGgcu-CGAUCccGCCGUCGGCg -3' miRNA: 3'- -UCG-UGUaguuGCUAGuaCGGCAGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 28196 | 0.7 | 0.771713 |
Target: 5'- -aCGCGUCccacauguguccguaGACGGUCGUGCCGccaccgUCGGCg -3' miRNA: 3'- ucGUGUAG---------------UUGCUAGUACGGC------AGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 40560 | 0.7 | 0.777853 |
Target: 5'- cGCGCGcCcgcGCGGUguUGCUGUCGGCg -3' miRNA: 3'- uCGUGUaGu--UGCUAguACGGCAGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 14229 | 0.7 | 0.797896 |
Target: 5'- cGCGCGUCGuGCGuAUCggGCCGggcaaCGACg -3' miRNA: 3'- uCGUGUAGU-UGC-UAGuaCGGCa----GCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 56929 | 0.69 | 0.817221 |
Target: 5'- -cCGCGUCggUGAgCAUGCgGUUGGCg -3' miRNA: 3'- ucGUGUAGuuGCUaGUACGgCAGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 34374 | 0.69 | 0.835738 |
Target: 5'- cGGCGCGuaaccUCGACGcgCAacUGCUGcUCGACc -3' miRNA: 3'- -UCGUGU-----AGUUGCuaGU--ACGGC-AGCUG- -5' |
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23333 | 5' | -51 | NC_005259.1 | + | 51685 | 0.68 | 0.853368 |
Target: 5'- gGGCGCG-CGAUGGUCucauagGUGCCGaacugUCGACc -3' miRNA: 3'- -UCGUGUaGUUGCUAG------UACGGC-----AGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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