miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23333 5' -51 NC_005259.1 + 5877 1.1 0.003183
Target:  5'- gAGCACAUCAACGAUCAUGCCGUCGACc -3'
miRNA:   3'- -UCGUGUAGUUGCUAGUACGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 7337 0.66 0.947217
Target:  5'- gAGUACGUCGaggccggacagACGuUCGUGCUGU-GGCa -3'
miRNA:   3'- -UCGUGUAGU-----------UGCuAGUACGGCAgCUG- -5'
23333 5' -51 NC_005259.1 + 7397 0.67 0.893101
Target:  5'- cGCGagacCcgCAACGGcauccUCGUcGCCGUCGGCg -3'
miRNA:   3'- uCGU----GuaGUUGCU-----AGUA-CGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 8068 0.68 0.870036
Target:  5'- cGCcgACAUCGA-GAUCGUGCCGcgcUGGCg -3'
miRNA:   3'- uCG--UGUAGUUgCUAGUACGGCa--GCUG- -5'
23333 5' -51 NC_005259.1 + 9154 0.73 0.625389
Target:  5'- uGCcCGUCGACGG-CAUGCCGgUGGCa -3'
miRNA:   3'- uCGuGUAGUUGCUaGUACGGCaGCUG- -5'
23333 5' -51 NC_005259.1 + 9489 0.7 0.76759
Target:  5'- cGCGCAUCGagGCGAggaaCGUGCgcucgucgcgcgCGUCGACc -3'
miRNA:   3'- uCGUGUAGU--UGCUa---GUACG------------GCAGCUG- -5'
23333 5' -51 NC_005259.1 + 11175 0.67 0.890903
Target:  5'- uGCAgAUCAGCGccucaugcauagcaGUCAccgcacccuuUGCCGUCGcACa -3'
miRNA:   3'- uCGUgUAGUUGC--------------UAGU----------ACGGCAGC-UG- -5'
23333 5' -51 NC_005259.1 + 11330 0.8 0.251827
Target:  5'- cAGCuCGUCGuCGGUCAUGCCGUUGAg -3'
miRNA:   3'- -UCGuGUAGUuGCUAGUACGGCAGCUg -5'
23333 5' -51 NC_005259.1 + 13669 0.67 0.920003
Target:  5'- -cUACAUCGACGGU-GUGCuCGUgGACc -3'
miRNA:   3'- ucGUGUAGUUGCUAgUACG-GCAgCUG- -5'
23333 5' -51 NC_005259.1 + 14229 0.7 0.797896
Target:  5'- cGCGCGUCGuGCGuAUCggGCCGggcaaCGACg -3'
miRNA:   3'- uCGUGUAGU-UGC-UAGuaCGGCa----GCUG- -5'
23333 5' -51 NC_005259.1 + 17070 0.66 0.926018
Target:  5'- cGCGCAUUuguGCG-UCAgGCCGcCGAUa -3'
miRNA:   3'- uCGUGUAGu--UGCuAGUaCGGCaGCUG- -5'
23333 5' -51 NC_005259.1 + 19178 0.68 0.853368
Target:  5'- cGGCGC-UCAACGG---UGCCcUCGACa -3'
miRNA:   3'- -UCGUGuAGUUGCUaguACGGcAGCUG- -5'
23333 5' -51 NC_005259.1 + 19483 0.66 0.942344
Target:  5'- cAGUuCGUCAACGAUC-UGCCGaC-ACa -3'
miRNA:   3'- -UCGuGUAGUUGCUAGuACGGCaGcUG- -5'
23333 5' -51 NC_005259.1 + 21062 0.66 0.926018
Target:  5'- cGC-CAUCGuguggACGcgUAUGCCGcugUCGACg -3'
miRNA:   3'- uCGuGUAGU-----UGCuaGUACGGC---AGCUG- -5'
23333 5' -51 NC_005259.1 + 22000 0.75 0.504495
Target:  5'- cGGCAaGUCGACGGUCAucggucgcacUGCCGUCaACg -3'
miRNA:   3'- -UCGUgUAGUUGCUAGU----------ACGGCAGcUG- -5'
23333 5' -51 NC_005259.1 + 22138 0.66 0.926018
Target:  5'- cAGcCACGUCGGC-AUCGUGCgCGcCGAa -3'
miRNA:   3'- -UC-GUGUAGUUGcUAGUACG-GCaGCUg -5'
23333 5' -51 NC_005259.1 + 24243 0.66 0.947217
Target:  5'- aGGCACGcgaguUCGGCGAgugCGUGCaCGcgUGGCu -3'
miRNA:   3'- -UCGUGU-----AGUUGCUa--GUACG-GCa-GCUG- -5'
23333 5' -51 NC_005259.1 + 27156 0.68 0.861826
Target:  5'- uGUugGggcCAACGA---UGCCGUCGGCg -3'
miRNA:   3'- uCGugUa--GUUGCUaguACGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 28196 0.7 0.771713
Target:  5'- -aCGCGUCccacauguguccguaGACGGUCGUGCCGccaccgUCGGCg -3'
miRNA:   3'- ucGUGUAG---------------UUGCUAGUACGGC------AGCUG- -5'
23333 5' -51 NC_005259.1 + 30851 0.68 0.861826
Target:  5'- uGCACcUCAAgGuagccGUCAUcGCCGUCGAg -3'
miRNA:   3'- uCGUGuAGUUgC-----UAGUA-CGGCAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.