miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23333 5' -51 NC_005259.1 + 53618 0.66 0.947217
Target:  5'- cAGCagGCGUCgAGCGG---UGCCGUUGGCc -3'
miRNA:   3'- -UCG--UGUAG-UUGCUaguACGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 9489 0.7 0.76759
Target:  5'- cGCGCAUCGagGCGAggaaCGUGCgcucgucgcgcgCGUCGACc -3'
miRNA:   3'- uCGUGUAGU--UGCUa---GUACG------------GCAGCUG- -5'
23333 5' -51 NC_005259.1 + 33302 0.7 0.76759
Target:  5'- cGGCuGCGgcu-CGAUCccGCCGUCGGCg -3'
miRNA:   3'- -UCG-UGUaguuGCUAGuaCGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 28196 0.7 0.771713
Target:  5'- -aCGCGUCccacauguguccguaGACGGUCGUGCCGccaccgUCGGCg -3'
miRNA:   3'- ucGUGUAG---------------UUGCUAGUACGGC------AGCUG- -5'
23333 5' -51 NC_005259.1 + 40560 0.7 0.777853
Target:  5'- cGCGCGcCcgcGCGGUguUGCUGUCGGCg -3'
miRNA:   3'- uCGUGUaGu--UGCUAguACGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 14229 0.7 0.797896
Target:  5'- cGCGCGUCGuGCGuAUCggGCCGggcaaCGACg -3'
miRNA:   3'- uCGUGUAGU-UGC-UAGuaCGGCa----GCUG- -5'
23333 5' -51 NC_005259.1 + 56929 0.69 0.817221
Target:  5'- -cCGCGUCggUGAgCAUGCgGUUGGCg -3'
miRNA:   3'- ucGUGUAGuuGCUaGUACGgCAGCUG- -5'
23333 5' -51 NC_005259.1 + 34374 0.69 0.835738
Target:  5'- cGGCGCGuaaccUCGACGcgCAacUGCUGcUCGACc -3'
miRNA:   3'- -UCGUGU-----AGUUGCuaGU--ACGGC-AGCUG- -5'
23333 5' -51 NC_005259.1 + 19178 0.68 0.853368
Target:  5'- cGGCGC-UCAACGG---UGCCcUCGACa -3'
miRNA:   3'- -UCGUGuAGUUGCUaguACGGcAGCUG- -5'
23333 5' -51 NC_005259.1 + 52768 0.7 0.757183
Target:  5'- gAGCuCGUCggUG-UCggcagcguGUGCCGUCGACa -3'
miRNA:   3'- -UCGuGUAGuuGCuAG--------UACGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 67689 0.71 0.735983
Target:  5'- cGGguCAUCAAUGAUCAUGagaUCGGCg -3'
miRNA:   3'- -UCguGUAGUUGCUAGUACggcAGCUG- -5'
23333 5' -51 NC_005259.1 + 54740 0.71 0.735983
Target:  5'- aGGCugcCGaCAGCGAUCAgGCCGcCGACc -3'
miRNA:   3'- -UCGu--GUaGUUGCUAGUaCGGCaGCUG- -5'
23333 5' -51 NC_005259.1 + 58911 0.84 0.163185
Target:  5'- gGGCuCGUCGGCGGUCuUGUCGUCGGCg -3'
miRNA:   3'- -UCGuGUAGUUGCUAGuACGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 11330 0.8 0.251827
Target:  5'- cAGCuCGUCGuCGGUCAUGCCGUUGAg -3'
miRNA:   3'- -UCGuGUAGUuGCUAGUACGGCAGCUg -5'
23333 5' -51 NC_005259.1 + 22000 0.75 0.504495
Target:  5'- cGGCAaGUCGACGGUCAucggucgcacUGCCGUCaACg -3'
miRNA:   3'- -UCGUgUAGUUGCUAGU----------ACGGCAGcUG- -5'
23333 5' -51 NC_005259.1 + 40597 0.74 0.569617
Target:  5'- cAGCACAUCGuuguaGGUCuggcUGCCGUCGcGCa -3'
miRNA:   3'- -UCGUGUAGUug---CUAGu---ACGGCAGC-UG- -5'
23333 5' -51 NC_005259.1 + 47162 0.73 0.614183
Target:  5'- cAGCAgAUCAccguagcgGCGAaggUCggcgGUGCCGUCGGCg -3'
miRNA:   3'- -UCGUgUAGU--------UGCU---AG----UACGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 9154 0.73 0.625389
Target:  5'- uGCcCGUCGACGG-CAUGCCGgUGGCa -3'
miRNA:   3'- uCGuGUAGUUGCUaGUACGGCaGCUG- -5'
23333 5' -51 NC_005259.1 + 57662 0.71 0.69238
Target:  5'- cAGCACGUCGACcguGUCcgGCCaaUCGACc -3'
miRNA:   3'- -UCGUGUAGUUGc--UAGuaCGGc-AGCUG- -5'
23333 5' -51 NC_005259.1 + 49743 0.71 0.725215
Target:  5'- gAGCugcuCGUCAgugACGGUCuUGCCGUCuGCg -3'
miRNA:   3'- -UCGu---GUAGU---UGCUAGuACGGCAGcUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.