miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23334 5' -59.9 NC_005259.1 + 54234 0.66 0.560641
Target:  5'- uAGGGUCGguccuccuaAGUcggGCGCGUGaaCGCGCCu -3'
miRNA:   3'- cUCCUAGC---------UCGa--UGCGCGCg-GCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 59134 0.66 0.550368
Target:  5'- aGAGcGUCGAGCU-CG-GCaGCgGUGCCg -3'
miRNA:   3'- -CUCcUAGCUCGAuGCgCG-CGgCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 46868 0.66 0.550368
Target:  5'- --cGGUCGAGgCUugaauCGCGcCGCCGC-CCg -3'
miRNA:   3'- cucCUAGCUC-GAu----GCGC-GCGGCGcGG- -5'
23334 5' -59.9 NC_005259.1 + 49991 0.66 0.540153
Target:  5'- -cGGAUCGcgugcggacGGCUgcccucgugcACGgGCGCUGCGUa -3'
miRNA:   3'- cuCCUAGC---------UCGA----------UGCgCGCGGCGCGg -5'
23334 5' -59.9 NC_005259.1 + 7201 0.66 0.537101
Target:  5'- -cGGAcgcacCGGGCUGCgguggaucuGCGUgaugaacgacggcaGCCGCGCCg -3'
miRNA:   3'- cuCCUa----GCUCGAUG---------CGCG--------------CGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 61846 0.66 0.534055
Target:  5'- cAGGggUGAGCaccucggccaccgccU-CGCGUGCCGCGUg -3'
miRNA:   3'- cUCCuaGCUCG---------------AuGCGCGCGGCGCGg -5'
23334 5' -59.9 NC_005259.1 + 14212 0.66 0.525963
Target:  5'- cGGGAUCaacuacccgGCGCGCGUCGUGCg -3'
miRNA:   3'- cUCCUAGcucga----UGCGCGCGGCGCGg -5'
23334 5' -59.9 NC_005259.1 + 5909 0.66 0.519924
Target:  5'- cGAGG-UCGAGgUGCuGCGCaCCGuCGaCCg -3'
miRNA:   3'- -CUCCuAGCUCgAUG-CGCGcGGC-GC-GG- -5'
23334 5' -59.9 NC_005259.1 + 16362 0.66 0.519924
Target:  5'- cGGaGAUCG---UGCGUGcCGCUGCGCCg -3'
miRNA:   3'- cUC-CUAGCucgAUGCGC-GCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 17752 0.66 0.509921
Target:  5'- --cGAUCcgugaGGCcgcCGCGCGCCGgGCCg -3'
miRNA:   3'- cucCUAGc----UCGau-GCGCGCGGCgCGG- -5'
23334 5' -59.9 NC_005259.1 + 59362 0.66 0.509921
Target:  5'- uGGGAUCGcucuuGCgaaUACGcCGCaCCGUGCCu -3'
miRNA:   3'- cUCCUAGCu----CG---AUGC-GCGcGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 37127 0.66 0.509921
Target:  5'- gGAGGuGUUGAuGaaguagaUGCGCGCauagccgucaccGCCGCGCCc -3'
miRNA:   3'- -CUCC-UAGCU-Cg------AUGCGCG------------CGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 64427 0.67 0.499999
Target:  5'- aGGGAUcgccgaCGAGCUGCcgGgGCGCUGC-CCu -3'
miRNA:   3'- cUCCUA------GCUCGAUG--CgCGCGGCGcGG- -5'
23334 5' -59.9 NC_005259.1 + 5650 0.67 0.499999
Target:  5'- cGAGGAcggCGGGCgcuacACGCGCGacaacaucgccCCGCacuGCCu -3'
miRNA:   3'- -CUCCUa--GCUCGa----UGCGCGC-----------GGCG---CGG- -5'
23334 5' -59.9 NC_005259.1 + 4627 0.67 0.498025
Target:  5'- -uGGcgCGAGUUcuggauagugccCGCGCaCCGCGCCu -3'
miRNA:   3'- cuCCuaGCUCGAu-----------GCGCGcGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 52011 0.67 0.490164
Target:  5'- -cGGAUgcaCGAGCgucagGCcgccgcacuGCGCGCUGuCGCCg -3'
miRNA:   3'- cuCCUA---GCUCGa----UG---------CGCGCGGC-GCGG- -5'
23334 5' -59.9 NC_005259.1 + 63670 0.67 0.48042
Target:  5'- -cGGAcaccUCGGGC-ACcgGCGCGCCggggaucuGCGCCu -3'
miRNA:   3'- cuCCU----AGCUCGaUG--CGCGCGG--------CGCGG- -5'
23334 5' -59.9 NC_005259.1 + 58564 0.67 0.48042
Target:  5'- cGGGcGGUUGGGCcggaucgcgGCGCGgcUGCCGgGCCg -3'
miRNA:   3'- -CUC-CUAGCUCGa--------UGCGC--GCGGCgCGG- -5'
23334 5' -59.9 NC_005259.1 + 26934 0.67 0.479451
Target:  5'- -uGGAucUCGGcauacgccgcuGCUggaacguGCGCaGCGCCGUGCCg -3'
miRNA:   3'- cuCCU--AGCU-----------CGA-------UGCG-CGCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 40818 0.67 0.470771
Target:  5'- cGGGGUCGAcGCgcACGaUGgGCCGCGUg -3'
miRNA:   3'- cUCCUAGCU-CGa-UGC-GCgCGGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.