Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23334 | 5' | -59.9 | NC_005259.1 | + | 54234 | 0.66 | 0.560641 |
Target: 5'- uAGGGUCGguccuccuaAGUcggGCGCGUGaaCGCGCCu -3' miRNA: 3'- cUCCUAGC---------UCGa--UGCGCGCg-GCGCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 59134 | 0.66 | 0.550368 |
Target: 5'- aGAGcGUCGAGCU-CG-GCaGCgGUGCCg -3' miRNA: 3'- -CUCcUAGCUCGAuGCgCG-CGgCGCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 46868 | 0.66 | 0.550368 |
Target: 5'- --cGGUCGAGgCUugaauCGCGcCGCCGC-CCg -3' miRNA: 3'- cucCUAGCUC-GAu----GCGC-GCGGCGcGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 49991 | 0.66 | 0.540153 |
Target: 5'- -cGGAUCGcgugcggacGGCUgcccucgugcACGgGCGCUGCGUa -3' miRNA: 3'- cuCCUAGC---------UCGA----------UGCgCGCGGCGCGg -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 7201 | 0.66 | 0.537101 |
Target: 5'- -cGGAcgcacCGGGCUGCgguggaucuGCGUgaugaacgacggcaGCCGCGCCg -3' miRNA: 3'- cuCCUa----GCUCGAUG---------CGCG--------------CGGCGCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 61846 | 0.66 | 0.534055 |
Target: 5'- cAGGggUGAGCaccucggccaccgccU-CGCGUGCCGCGUg -3' miRNA: 3'- cUCCuaGCUCG---------------AuGCGCGCGGCGCGg -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 14212 | 0.66 | 0.525963 |
Target: 5'- cGGGAUCaacuacccgGCGCGCGUCGUGCg -3' miRNA: 3'- cUCCUAGcucga----UGCGCGCGGCGCGg -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 5909 | 0.66 | 0.519924 |
Target: 5'- cGAGG-UCGAGgUGCuGCGCaCCGuCGaCCg -3' miRNA: 3'- -CUCCuAGCUCgAUG-CGCGcGGC-GC-GG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 16362 | 0.66 | 0.519924 |
Target: 5'- cGGaGAUCG---UGCGUGcCGCUGCGCCg -3' miRNA: 3'- cUC-CUAGCucgAUGCGC-GCGGCGCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 37127 | 0.66 | 0.509921 |
Target: 5'- gGAGGuGUUGAuGaaguagaUGCGCGCauagccgucaccGCCGCGCCc -3' miRNA: 3'- -CUCC-UAGCU-Cg------AUGCGCG------------CGGCGCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 59362 | 0.66 | 0.509921 |
Target: 5'- uGGGAUCGcucuuGCgaaUACGcCGCaCCGUGCCu -3' miRNA: 3'- cUCCUAGCu----CG---AUGC-GCGcGGCGCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 17752 | 0.66 | 0.509921 |
Target: 5'- --cGAUCcgugaGGCcgcCGCGCGCCGgGCCg -3' miRNA: 3'- cucCUAGc----UCGau-GCGCGCGGCgCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 64427 | 0.67 | 0.499999 |
Target: 5'- aGGGAUcgccgaCGAGCUGCcgGgGCGCUGC-CCu -3' miRNA: 3'- cUCCUA------GCUCGAUG--CgCGCGGCGcGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 5650 | 0.67 | 0.499999 |
Target: 5'- cGAGGAcggCGGGCgcuacACGCGCGacaacaucgccCCGCacuGCCu -3' miRNA: 3'- -CUCCUa--GCUCGa----UGCGCGC-----------GGCG---CGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 4627 | 0.67 | 0.498025 |
Target: 5'- -uGGcgCGAGUUcuggauagugccCGCGCaCCGCGCCu -3' miRNA: 3'- cuCCuaGCUCGAu-----------GCGCGcGGCGCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 52011 | 0.67 | 0.490164 |
Target: 5'- -cGGAUgcaCGAGCgucagGCcgccgcacuGCGCGCUGuCGCCg -3' miRNA: 3'- cuCCUA---GCUCGa----UG---------CGCGCGGC-GCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 58564 | 0.67 | 0.48042 |
Target: 5'- cGGGcGGUUGGGCcggaucgcgGCGCGgcUGCCGgGCCg -3' miRNA: 3'- -CUC-CUAGCUCGa--------UGCGC--GCGGCgCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 63670 | 0.67 | 0.48042 |
Target: 5'- -cGGAcaccUCGGGC-ACcgGCGCGCCggggaucuGCGCCu -3' miRNA: 3'- cuCCU----AGCUCGaUG--CGCGCGG--------CGCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 26934 | 0.67 | 0.479451 |
Target: 5'- -uGGAucUCGGcauacgccgcuGCUggaacguGCGCaGCGCCGUGCCg -3' miRNA: 3'- cuCCU--AGCU-----------CGA-------UGCG-CGCGGCGCGG- -5' |
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23334 | 5' | -59.9 | NC_005259.1 | + | 8464 | 0.67 | 0.470771 |
Target: 5'- cGAGGua-GAGCUGCacgaGCaCCGCGCUg -3' miRNA: 3'- -CUCCuagCUCGAUGcg--CGcGGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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