miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 5' -65.6 NC_005259.1 + 4426 1.07 0.000245
Target:  5'- cCGCGCGCCCGAGGUCGAGCCGCCCGUg -3'
miRNA:   3'- -GCGCGCGGGCUCCAGCUCGGCGGGCA- -5'
23337 5' -65.6 NC_005259.1 + 46586 0.75 0.067992
Target:  5'- cCGCGcCGCCCGAGG-CGAGCaGCgCGUc -3'
miRNA:   3'- -GCGC-GCGGGCUCCaGCUCGgCGgGCA- -5'
23337 5' -65.6 NC_005259.1 + 41404 0.71 0.132579
Target:  5'- gCGCGcCGCUCGGGGUgcccacgaugugcaCGGGCCGCCa-- -3'
miRNA:   3'- -GCGC-GCGGGCUCCA--------------GCUCGGCGGgca -5'
23337 5' -65.6 NC_005259.1 + 45095 0.71 0.133595
Target:  5'- aGCGUGCCCGuguagccGGUCGGGCCGagaguggugCCGa -3'
miRNA:   3'- gCGCGCGGGCu------CCAGCUCGGCg--------GGCa -5'
23337 5' -65.6 NC_005259.1 + 9518 0.71 0.140554
Target:  5'- uCGCGCGCgucgaccgCCGccGGGUCaccggaGAGCUGCCCGg -3'
miRNA:   3'- -GCGCGCG--------GGC--UCCAG------CUCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 1900 0.7 0.155477
Target:  5'- uCGCGCGagcugCCGAGGaagCGcGCCGCCCc- -3'
miRNA:   3'- -GCGCGCg----GGCUCCa--GCuCGGCGGGca -5'
23337 5' -65.6 NC_005259.1 + 50101 0.7 0.155477
Target:  5'- gGUGCGCCCGAGGU-----UGCCCGUa -3'
miRNA:   3'- gCGCGCGGGCUCCAgcucgGCGGGCA- -5'
23337 5' -65.6 NC_005259.1 + 46837 0.7 0.167595
Target:  5'- --aGCGCCCc-GG-CGAGCUGCCCGa -3'
miRNA:   3'- gcgCGCGGGcuCCaGCUCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 56985 0.7 0.176138
Target:  5'- ----aGCCUGAGGaUCuGAGCUGCCCGUg -3'
miRNA:   3'- gcgcgCGGGCUCC-AG-CUCGGCGGGCA- -5'
23337 5' -65.6 NC_005259.1 + 22464 0.69 0.180553
Target:  5'- uCGUGCGCCCGcgcGGUCuGA-CCGUCCGc -3'
miRNA:   3'- -GCGCGCGGGCu--CCAG-CUcGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 45746 0.69 0.185066
Target:  5'- cCGCGCaccGCCuCGGGGaUGAGCaCGCCCu- -3'
miRNA:   3'- -GCGCG---CGG-GCUCCaGCUCG-GCGGGca -5'
23337 5' -65.6 NC_005259.1 + 1578 0.69 0.189212
Target:  5'- aGCGCGCCCcacaccGAGGUCGAGgUcagggcacaauugGCCCu- -3'
miRNA:   3'- gCGCGCGGG------CUCCAGCUCgG-------------CGGGca -5'
23337 5' -65.6 NC_005259.1 + 32875 0.69 0.189212
Target:  5'- aCGCGCGCggugaucgauucaCCGGGGgcgagggUGAGCCaCCCGg -3'
miRNA:   3'- -GCGCGCG-------------GGCUCCa------GCUCGGcGGGCa -5'
23337 5' -65.6 NC_005259.1 + 26142 0.69 0.194391
Target:  5'- aCGC-CG-CCGAGGcCGAGCaGCCCGa -3'
miRNA:   3'- -GCGcGCgGGCUCCaGCUCGgCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 57786 0.69 0.199206
Target:  5'- uGCGCGUCgGAGacGUUGAagaccucgacGCCGCCCGc -3'
miRNA:   3'- gCGCGCGGgCUC--CAGCU----------CGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 48468 0.69 0.209148
Target:  5'- cCGCGCGCC--GGGUCGcGUCGgCCUGUu -3'
miRNA:   3'- -GCGCGCGGgcUCCAGCuCGGC-GGGCA- -5'
23337 5' -65.6 NC_005259.1 + 36629 0.69 0.209148
Target:  5'- cCGCGcCGCCCGcaAGGcccgcgaucagCGAGCCGCCg-- -3'
miRNA:   3'- -GCGC-GCGGGC--UCCa----------GCUCGGCGGgca -5'
23337 5' -65.6 NC_005259.1 + 16543 0.69 0.209148
Target:  5'- gGUGCGCCCGAGcGaccaGAGaucCCGCCCa- -3'
miRNA:   3'- gCGCGCGGGCUC-Cag--CUC---GGCGGGca -5'
23337 5' -65.6 NC_005259.1 + 37396 0.68 0.214278
Target:  5'- cCGCGcCGCCCaugguGuuGUUGAcGCCGCCCGc -3'
miRNA:   3'- -GCGC-GCGGG-----CucCAGCU-CGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 64018 0.68 0.219516
Target:  5'- -cCGCGCCCGAGGcgcggCGAGgCCGgugaCCGg -3'
miRNA:   3'- gcGCGCGGGCUCCa----GCUC-GGCg---GGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.