miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 5' -65.6 NC_005259.1 + 766 0.66 0.333378
Target:  5'- cCGCGUccaccGCgCCGAGG-CG-GCUGCCCu- -3'
miRNA:   3'- -GCGCG-----CG-GGCUCCaGCuCGGCGGGca -5'
23337 5' -65.6 NC_005259.1 + 1578 0.69 0.189212
Target:  5'- aGCGCGCCCcacaccGAGGUCGAGgUcagggcacaauugGCCCu- -3'
miRNA:   3'- gCGCGCGGG------CUCCAGCUCgG-------------CGGGca -5'
23337 5' -65.6 NC_005259.1 + 1900 0.7 0.155477
Target:  5'- uCGCGCGagcugCCGAGGaagCGcGCCGCCCc- -3'
miRNA:   3'- -GCGCGCg----GGCUCCa--GCuCGGCGGGca -5'
23337 5' -65.6 NC_005259.1 + 2152 0.67 0.27169
Target:  5'- gGUGCugGCCagCGGcGUCGAGCCGCCgGUu -3'
miRNA:   3'- gCGCG--CGG--GCUcCAGCUCGGCGGgCA- -5'
23337 5' -65.6 NC_005259.1 + 4426 1.07 0.000245
Target:  5'- cCGCGCGCCCGAGGUCGAGCCGCCCGUg -3'
miRNA:   3'- -GCGCGCGGGCUCCAGCUCGGCGGGCA- -5'
23337 5' -65.6 NC_005259.1 + 6204 0.68 0.241566
Target:  5'- aGCGUGagCGGGGU-GAGCCGCCgCGc -3'
miRNA:   3'- gCGCGCggGCUCCAgCUCGGCGG-GCa -5'
23337 5' -65.6 NC_005259.1 + 6662 0.66 0.326043
Target:  5'- aGgGUGUCCGuGacgcgCGAGCUGCCCGc -3'
miRNA:   3'- gCgCGCGGGCuCca---GCUCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 8645 0.66 0.333378
Target:  5'- gGCGgGCaCGAggcuguGGUCGGGCUGCCaCGc -3'
miRNA:   3'- gCGCgCGgGCU------CCAGCUCGGCGG-GCa -5'
23337 5' -65.6 NC_005259.1 + 9400 0.66 0.326043
Target:  5'- aCGCGCGCCCc-GGUaCGGGUgCGCCa-- -3'
miRNA:   3'- -GCGCGCGGGcuCCA-GCUCG-GCGGgca -5'
23337 5' -65.6 NC_005259.1 + 9518 0.71 0.140554
Target:  5'- uCGCGCGCgucgaccgCCGccGGGUCaccggaGAGCUGCCCGg -3'
miRNA:   3'- -GCGCGCG--------GGC--UCCAG------CUCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 14858 0.68 0.241566
Target:  5'- uCGUGCuCgCGAGGuUCGcGCUGCCCGa -3'
miRNA:   3'- -GCGCGcGgGCUCC-AGCuCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 16543 0.69 0.209148
Target:  5'- gGUGCGCCCGAGcGaccaGAGaucCCGCCCa- -3'
miRNA:   3'- gCGCGCGGGCUC-Cag--CUC---GGCGGGca -5'
23337 5' -65.6 NC_005259.1 + 17372 0.67 0.28456
Target:  5'- gGCGCuGgUCGuGGUCGAcugcgacacuGCCGCCCa- -3'
miRNA:   3'- gCGCG-CgGGCuCCAGCU----------CGGCGGGca -5'
23337 5' -65.6 NC_005259.1 + 19255 0.66 0.311734
Target:  5'- gGC-CGCCUGc---CGGGCCGCCCGa -3'
miRNA:   3'- gCGcGCGGGCuccaGCUCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 20698 0.66 0.297907
Target:  5'- -aCGCGCUCGGuGGUCGAagguuucaccccGCCGCgCGa -3'
miRNA:   3'- gcGCGCGGGCU-CCAGCU------------CGGCGgGCa -5'
23337 5' -65.6 NC_005259.1 + 22464 0.69 0.180553
Target:  5'- uCGUGCGCCCGcgcGGUCuGA-CCGUCCGc -3'
miRNA:   3'- -GCGCGCGGGCu--CCAG-CUcGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 22621 0.67 0.257473
Target:  5'- cCGC-CGCCCGaucaucuucgccgcGucGGUCGAcGCCGCCCa- -3'
miRNA:   3'- -GCGcGCGGGC--------------U--CCAGCU-CGGCGGGca -5'
23337 5' -65.6 NC_005259.1 + 22982 0.68 0.235886
Target:  5'- -uCGUGCCCGGuGUCGAcGCCGCCg-- -3'
miRNA:   3'- gcGCGCGGGCUcCAGCU-CGGCGGgca -5'
23337 5' -65.6 NC_005259.1 + 25091 0.67 0.255664
Target:  5'- cCGCuGCGCCCGccccgagcaagggcaAGGUCGAccccGCCGaccucCCCGa -3'
miRNA:   3'- -GCG-CGCGGGC---------------UCCAGCU----CGGC-----GGGCa -5'
23337 5' -65.6 NC_005259.1 + 26142 0.69 0.194391
Target:  5'- aCGC-CG-CCGAGGcCGAGCaGCCCGa -3'
miRNA:   3'- -GCGcGCgGGCUCCaGCUCGgCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.