Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23337 | 5' | -65.6 | NC_005259.1 | + | 766 | 0.66 | 0.333378 |
Target: 5'- cCGCGUccaccGCgCCGAGG-CG-GCUGCCCu- -3' miRNA: 3'- -GCGCG-----CG-GGCUCCaGCuCGGCGGGca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 32875 | 0.69 | 0.189212 |
Target: 5'- aCGCGCGCggugaucgauucaCCGGGGgcgagggUGAGCCaCCCGg -3' miRNA: 3'- -GCGCGCG-------------GGCUCCa------GCUCGGcGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 26142 | 0.69 | 0.194391 |
Target: 5'- aCGC-CG-CCGAGGcCGAGCaGCCCGa -3' miRNA: 3'- -GCGcGCgGGCUCCaGCUCGgCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 57786 | 0.69 | 0.199206 |
Target: 5'- uGCGCGUCgGAGacGUUGAagaccucgacGCCGCCCGc -3' miRNA: 3'- gCGCGCGGgCUC--CAGCU----------CGGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 16543 | 0.69 | 0.209148 |
Target: 5'- gGUGCGCCCGAGcGaccaGAGaucCCGCCCa- -3' miRNA: 3'- gCGCGCGGGCUC-Cag--CUC---GGCGGGca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 36629 | 0.69 | 0.209148 |
Target: 5'- cCGCGcCGCCCGcaAGGcccgcgaucagCGAGCCGCCg-- -3' miRNA: 3'- -GCGC-GCGGGC--UCCa----------GCUCGGCGGgca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 48468 | 0.69 | 0.209148 |
Target: 5'- cCGCGCGCC--GGGUCGcGUCGgCCUGUu -3' miRNA: 3'- -GCGCGCGGgcUCCAGCuCGGC-GGGCA- -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 37396 | 0.68 | 0.214278 |
Target: 5'- cCGCGcCGCCCaugguGuuGUUGAcGCCGCCCGc -3' miRNA: 3'- -GCGC-GCGGG-----CucCAGCU-CGGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 31093 | 0.68 | 0.219516 |
Target: 5'- aGCGCGUCgGGGaucaGUCcgauGAGUCGCCCGa -3' miRNA: 3'- gCGCGCGGgCUC----CAG----CUCGGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 1578 | 0.69 | 0.189212 |
Target: 5'- aGCGCGCCCcacaccGAGGUCGAGgUcagggcacaauugGCCCu- -3' miRNA: 3'- gCGCGCGGG------CUCCAGCUCgG-------------CGGGca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 45746 | 0.69 | 0.185066 |
Target: 5'- cCGCGCaccGCCuCGGGGaUGAGCaCGCCCu- -3' miRNA: 3'- -GCGCG---CGG-GCUCCaGCUCG-GCGGGca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 22464 | 0.69 | 0.180553 |
Target: 5'- uCGUGCGCCCGcgcGGUCuGA-CCGUCCGc -3' miRNA: 3'- -GCGCGCGGGCu--CCAG-CUcGGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 46586 | 0.75 | 0.067992 |
Target: 5'- cCGCGcCGCCCGAGG-CGAGCaGCgCGUc -3' miRNA: 3'- -GCGC-GCGGGCUCCaGCUCGgCGgGCA- -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 41404 | 0.71 | 0.132579 |
Target: 5'- gCGCGcCGCUCGGGGUgcccacgaugugcaCGGGCCGCCa-- -3' miRNA: 3'- -GCGC-GCGGGCUCCA--------------GCUCGGCGGgca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 45095 | 0.71 | 0.133595 |
Target: 5'- aGCGUGCCCGuguagccGGUCGGGCCGagaguggugCCGa -3' miRNA: 3'- gCGCGCGGGCu------CCAGCUCGGCg--------GGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 9518 | 0.71 | 0.140554 |
Target: 5'- uCGCGCGCgucgaccgCCGccGGGUCaccggaGAGCUGCCCGg -3' miRNA: 3'- -GCGCGCG--------GGC--UCCAG------CUCGGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 50101 | 0.7 | 0.155477 |
Target: 5'- gGUGCGCCCGAGGU-----UGCCCGUa -3' miRNA: 3'- gCGCGCGGGCUCCAgcucgGCGGGCA- -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 1900 | 0.7 | 0.155477 |
Target: 5'- uCGCGCGagcugCCGAGGaagCGcGCCGCCCc- -3' miRNA: 3'- -GCGCGCg----GGCUCCa--GCuCGGCGGGca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 46837 | 0.7 | 0.167595 |
Target: 5'- --aGCGCCCc-GG-CGAGCUGCCCGa -3' miRNA: 3'- gcgCGCGGGcuCCaGCUCGGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 56985 | 0.7 | 0.176138 |
Target: 5'- ----aGCCUGAGGaUCuGAGCUGCCCGUg -3' miRNA: 3'- gcgcgCGGGCUCC-AG-CUCGGCGGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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