miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23340 5' -59.1 NC_005259.1 + 3064 1.11 0.000563
Target:  5'- aCCGUCGACGGGCCGAGGCCGACAAGAg -3'
miRNA:   3'- -GGCAGCUGCCCGGCUCCGGCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 11297 0.79 0.107115
Target:  5'- aCgGUCGACGGGCgUGAGGCCGAgaCGGGc -3'
miRNA:   3'- -GgCAGCUGCCCG-GCUCCGGCU--GUUCu -5'
23340 5' -59.1 NC_005259.1 + 53655 0.78 0.132367
Target:  5'- aCGUUGuACGGGCCGAGGCCccacGCGGGc -3'
miRNA:   3'- gGCAGC-UGCCCGGCUCCGGc---UGUUCu -5'
23340 5' -59.1 NC_005259.1 + 45101 0.77 0.150832
Target:  5'- cCCGUguagcCGGuCGGGCCGAGagugguGCCGACGAGGu -3'
miRNA:   3'- -GGCA-----GCU-GCCCGGCUC------CGGCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 33901 0.76 0.167258
Target:  5'- cCCGcgCGACGGGCCGAGaCCGGCc--- -3'
miRNA:   3'- -GGCa-GCUGCCCGGCUCcGGCUGuucu -5'
23340 5' -59.1 NC_005259.1 + 66510 0.74 0.215489
Target:  5'- cCUGUCGGCGGGgCGGucccGCCuGACAAGAg -3'
miRNA:   3'- -GGCAGCUGCCCgGCUc---CGG-CUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 28966 0.73 0.249834
Target:  5'- gCCGagGuCGGuGCCGAGGCCG-CGAGc -3'
miRNA:   3'- -GGCagCuGCC-CGGCUCCGGCuGUUCu -5'
23340 5' -59.1 NC_005259.1 + 5059 0.72 0.288575
Target:  5'- aCgGUCGAgaucgUGGGCCG-GGUCGACGGGc -3'
miRNA:   3'- -GgCAGCU-----GCCCGGCuCCGGCUGUUCu -5'
23340 5' -59.1 NC_005259.1 + 26438 0.72 0.302499
Target:  5'- aCCGcCGagcggGCGGGCCGguGGGCCGAUGuGGAa -3'
miRNA:   3'- -GGCaGC-----UGCCCGGC--UCCGGCUGU-UCU- -5'
23340 5' -59.1 NC_005259.1 + 24225 0.71 0.347342
Target:  5'- aCGUgacCGGCgGGGCCGAGGCacgcgaguuCGGCGAGu -3'
miRNA:   3'- gGCA---GCUG-CCCGGCUCCG---------GCUGUUCu -5'
23340 5' -59.1 NC_005259.1 + 56376 0.71 0.347342
Target:  5'- gCCGUCG-CGGGCCGcgucGGCUGAUc--- -3'
miRNA:   3'- -GGCAGCuGCCCGGCu---CCGGCUGuucu -5'
23340 5' -59.1 NC_005259.1 + 67212 0.71 0.355263
Target:  5'- gCUGUCGGCgGGGUCGAuGCCGACc--- -3'
miRNA:   3'- -GGCAGCUG-CCCGGCUcCGGCUGuucu -5'
23340 5' -59.1 NC_005259.1 + 30825 0.71 0.36331
Target:  5'- -aGUcCGGCGcGCCGAGGUCGGCAAc- -3'
miRNA:   3'- ggCA-GCUGCcCGGCUCCGGCUGUUcu -5'
23340 5' -59.1 NC_005259.1 + 3855 0.7 0.37978
Target:  5'- aCCGUCGACGccGGUCGAGcGCCu-CGAGc -3'
miRNA:   3'- -GGCAGCUGC--CCGGCUC-CGGcuGUUCu -5'
23340 5' -59.1 NC_005259.1 + 7066 0.7 0.37978
Target:  5'- cCUGUCGACGGGC--GGGCUuGACAAu- -3'
miRNA:   3'- -GGCAGCUGCCCGgcUCCGG-CUGUUcu -5'
23340 5' -59.1 NC_005259.1 + 52638 0.7 0.37978
Target:  5'- gCGUCGGCuguGGGgCGAGGUgagCGACGAGc -3'
miRNA:   3'- gGCAGCUG---CCCgGCUCCG---GCUGUUCu -5'
23340 5' -59.1 NC_005259.1 + 21273 0.7 0.37978
Target:  5'- gUCGUCGGCcugacgagcaGGCCGAugaGGCCGaACGGGAg -3'
miRNA:   3'- -GGCAGCUGc---------CCGGCU---CCGGC-UGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 26133 0.7 0.3882
Target:  5'- gCCGgucCGACGccGCCGAGGCCGAgCAGc- -3'
miRNA:   3'- -GGCa--GCUGCc-CGGCUCCGGCU-GUUcu -5'
23340 5' -59.1 NC_005259.1 + 28640 0.7 0.396742
Target:  5'- aCCGgugcCGACaccGCCGAGGCCGccguCAAGAu -3'
miRNA:   3'- -GGCa---GCUGcc-CGGCUCCGGCu---GUUCU- -5'
23340 5' -59.1 NC_005259.1 + 33587 0.7 0.396742
Target:  5'- gCGUCG-CGGGCCaccGAGGCgCGGuCGAGc -3'
miRNA:   3'- gGCAGCuGCCCGG---CUCCG-GCU-GUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.