miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23340 5' -59.1 NC_005259.1 + 2166 0.67 0.537769
Target:  5'- gCGUCGAgccgcCGGuuGCCGAGGUcaugggccgcuaCGGCAAGGu -3'
miRNA:   3'- gGCAGCU-----GCC--CGGCUCCG------------GCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 3064 1.11 0.000563
Target:  5'- aCCGUCGACGGGCCGAGGCCGACAAGAg -3'
miRNA:   3'- -GGCAGCUGCCCGGCUCCGGCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 3855 0.7 0.37978
Target:  5'- aCCGUCGACGccGGUCGAGcGCCu-CGAGc -3'
miRNA:   3'- -GGCAGCUGC--CCGGCUC-CGGcuGUUCu -5'
23340 5' -59.1 NC_005259.1 + 5059 0.72 0.288575
Target:  5'- aCgGUCGAgaucgUGGGCCG-GGUCGACGGGc -3'
miRNA:   3'- -GgCAGCU-----GCCCGGCuCCGGCUGUUCu -5'
23340 5' -59.1 NC_005259.1 + 5895 0.67 0.588771
Target:  5'- gCCGUCGACcacGUCGAGGUCGAgGu-- -3'
miRNA:   3'- -GGCAGCUGcc-CGGCUCCGGCUgUucu -5'
23340 5' -59.1 NC_005259.1 + 6101 0.69 0.440294
Target:  5'- gCCGagaUCGcCGaGGCCGAGGCCGccgcuacGCGGGc -3'
miRNA:   3'- -GGC---AGCuGC-CCGGCUCCGGC-------UGUUCu -5'
23340 5' -59.1 NC_005259.1 + 7066 0.7 0.37978
Target:  5'- cCUGUCGACGGGC--GGGCUuGACAAu- -3'
miRNA:   3'- -GGCAGCUGCCCGgcUCCGG-CUGUUcu -5'
23340 5' -59.1 NC_005259.1 + 7328 0.67 0.558018
Target:  5'- gCCGUCGcCGaguacGUCGAGGCCGGacAGAc -3'
miRNA:   3'- -GGCAGCuGCc----CGGCUCCGGCUguUCU- -5'
23340 5' -59.1 NC_005259.1 + 8633 0.69 0.42308
Target:  5'- uCCGgcgagaaUGGCGGGCaCGAGGCUGugGucGGGc -3'
miRNA:   3'- -GGCa------GCUGCCCG-GCUCCGGCugU--UCU- -5'
23340 5' -59.1 NC_005259.1 + 8751 0.66 0.64057
Target:  5'- cCCGUCGA--GGUCGAGGCCcuuGGCcAGc -3'
miRNA:   3'- -GGCAGCUgcCCGGCUCCGG---CUGuUCu -5'
23340 5' -59.1 NC_005259.1 + 9156 0.68 0.488372
Target:  5'- cCCGUCGACGGcauGCCGGuggcaGCCGAUg--- -3'
miRNA:   3'- -GGCAGCUGCC---CGGCUc----CGGCUGuucu -5'
23340 5' -59.1 NC_005259.1 + 11297 0.79 0.107115
Target:  5'- aCgGUCGACGGGCgUGAGGCCGAgaCGGGc -3'
miRNA:   3'- -GgCAGCUGCCCG-GCUCCGGCU--GUUCu -5'
23340 5' -59.1 NC_005259.1 + 14232 0.67 0.547864
Target:  5'- gCGUCGugcguauCGGGCCG-GGCaaCGACGAc- -3'
miRNA:   3'- gGCAGCu------GCCCGGCuCCG--GCUGUUcu -5'
23340 5' -59.1 NC_005259.1 + 14551 0.66 0.64057
Target:  5'- uUCGUcCGGCaGGCCGAgcggGGaCCGGCGAa- -3'
miRNA:   3'- -GGCA-GCUGcCCGGCU----CC-GGCUGUUcu -5'
23340 5' -59.1 NC_005259.1 + 16614 0.67 0.537769
Target:  5'- aCUGUUcaACGGGCCGAGGCaggccaccuaCGGCGAc- -3'
miRNA:   3'- -GGCAGc-UGCCCGGCUCCG----------GCUGUUcu -5'
23340 5' -59.1 NC_005259.1 + 17832 0.68 0.507894
Target:  5'- gCCaUCGACggguGGGCCGAGGCCa------ -3'
miRNA:   3'- -GGcAGCUG----CCCGGCUCCGGcuguucu -5'
23340 5' -59.1 NC_005259.1 + 19711 0.67 0.547864
Target:  5'- aCGUUGGCugccGCCGAGGUgauCGACGGGGa -3'
miRNA:   3'- gGCAGCUGcc--CGGCUCCG---GCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 20650 0.69 0.42308
Target:  5'- aCGuUCGGCGGcaCCGGGGCCGAgGAc- -3'
miRNA:   3'- gGC-AGCUGCCc-GGCUCCGGCUgUUcu -5'
23340 5' -59.1 NC_005259.1 + 21273 0.7 0.37978
Target:  5'- gUCGUCGGCcugacgagcaGGCCGAugaGGCCGaACGGGAg -3'
miRNA:   3'- -GGCAGCUGc---------CCGGCU---CCGGC-UGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 22245 0.67 0.582591
Target:  5'- uCCGUCGACgcauucucuGGgacgaggugcaucacGCCGGGGCCGAgGGu- -3'
miRNA:   3'- -GGCAGCUG---------CC---------------CGGCUCCGGCUgUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.