Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23340 | 5' | -59.1 | NC_005259.1 | + | 8751 | 0.66 | 0.64057 |
Target: 5'- cCCGUCGA--GGUCGAGGCCcuuGGCcAGc -3' miRNA: 3'- -GGCAGCUgcCCGGCUCCGG---CUGuUCu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 30825 | 0.71 | 0.36331 |
Target: 5'- -aGUcCGGCGcGCCGAGGUCGGCAAc- -3' miRNA: 3'- ggCA-GCUGCcCGGCUCCGGCUGUUcu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 21273 | 0.7 | 0.37978 |
Target: 5'- gUCGUCGGCcugacgagcaGGCCGAugaGGCCGaACGGGAg -3' miRNA: 3'- -GGCAGCUGc---------CCGGCU---CCGGC-UGUUCU- -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 52638 | 0.7 | 0.37978 |
Target: 5'- gCGUCGGCuguGGGgCGAGGUgagCGACGAGc -3' miRNA: 3'- gGCAGCUG---CCCgGCUCCG---GCUGUUCu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 7066 | 0.7 | 0.37978 |
Target: 5'- cCUGUCGACGGGC--GGGCUuGACAAu- -3' miRNA: 3'- -GGCAGCUGCCCGgcUCCGG-CUGUUcu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 3855 | 0.7 | 0.37978 |
Target: 5'- aCCGUCGACGccGGUCGAGcGCCu-CGAGc -3' miRNA: 3'- -GGCAGCUGC--CCGGCUC-CGGcuGUUCu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 26133 | 0.7 | 0.3882 |
Target: 5'- gCCGgucCGACGccGCCGAGGCCGAgCAGc- -3' miRNA: 3'- -GGCa--GCUGCc-CGGCUCCGGCU-GUUcu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 28640 | 0.7 | 0.396742 |
Target: 5'- aCCGgugcCGACaccGCCGAGGCCGccguCAAGAu -3' miRNA: 3'- -GGCa---GCUGcc-CGGCUCCGGCu---GUUCU- -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 33587 | 0.7 | 0.396742 |
Target: 5'- gCGUCG-CGGGCCaccGAGGCgCGGuCGAGc -3' miRNA: 3'- gGCAGCuGCCCGG---CUCCG-GCU-GUUCu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 67212 | 0.71 | 0.355263 |
Target: 5'- gCUGUCGGCgGGGUCGAuGCCGACc--- -3' miRNA: 3'- -GGCAGCUG-CCCGGCUcCGGCUGuucu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 24225 | 0.71 | 0.347342 |
Target: 5'- aCGUgacCGGCgGGGCCGAGGCacgcgaguuCGGCGAGu -3' miRNA: 3'- gGCA---GCUG-CCCGGCUCCG---------GCUGUUCu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 56376 | 0.71 | 0.347342 |
Target: 5'- gCCGUCG-CGGGCCGcgucGGCUGAUc--- -3' miRNA: 3'- -GGCAGCuGCCCGGCu---CCGGCUGuucu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 11297 | 0.79 | 0.107115 |
Target: 5'- aCgGUCGACGGGCgUGAGGCCGAgaCGGGc -3' miRNA: 3'- -GgCAGCUGCCCG-GCUCCGGCU--GUUCu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 53655 | 0.78 | 0.132367 |
Target: 5'- aCGUUGuACGGGCCGAGGCCccacGCGGGc -3' miRNA: 3'- gGCAGC-UGCCCGGCUCCGGc---UGUUCu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 45101 | 0.77 | 0.150832 |
Target: 5'- cCCGUguagcCGGuCGGGCCGAGagugguGCCGACGAGGu -3' miRNA: 3'- -GGCA-----GCU-GCCCGGCUC------CGGCUGUUCU- -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 33901 | 0.76 | 0.167258 |
Target: 5'- cCCGcgCGACGGGCCGAGaCCGGCc--- -3' miRNA: 3'- -GGCa-GCUGCCCGGCUCcGGCUGuucu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 66510 | 0.74 | 0.215489 |
Target: 5'- cCUGUCGGCGGGgCGGucccGCCuGACAAGAg -3' miRNA: 3'- -GGCAGCUGCCCgGCUc---CGG-CUGUUCU- -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 28966 | 0.73 | 0.249834 |
Target: 5'- gCCGagGuCGGuGCCGAGGCCG-CGAGc -3' miRNA: 3'- -GGCagCuGCC-CGGCUCCGGCuGUUCu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 5059 | 0.72 | 0.288575 |
Target: 5'- aCgGUCGAgaucgUGGGCCG-GGUCGACGGGc -3' miRNA: 3'- -GgCAGCU-----GCCCGGCuCCGGCUGUUCu -5' |
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23340 | 5' | -59.1 | NC_005259.1 | + | 26438 | 0.72 | 0.302499 |
Target: 5'- aCCGcCGagcggGCGGGCCGguGGGCCGAUGuGGAa -3' miRNA: 3'- -GGCaGC-----UGCCCGGC--UCCGGCUGU-UCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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