miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23342 3' -55 NC_005259.1 + 43276 0.69 0.585402
Target:  5'- -gAGUUgaccgcaGCgCCCGCCGCCGACGcgcCCGCc -3'
miRNA:   3'- gaUCAG-------UG-GGGCGGUGGUUGUu--GGUG- -5'
23342 3' -55 NC_005259.1 + 40808 0.69 0.586486
Target:  5'- -cGGUCACCCucggggucgaCGCgCACgAugGGCCGCg -3'
miRNA:   3'- gaUCAGUGGG----------GCG-GUGgUugUUGGUG- -5'
23342 3' -55 NC_005259.1 + 30161 0.69 0.597345
Target:  5'- -gGGcCGCCUacagGCCGCC-ACAGCCGCc -3'
miRNA:   3'- gaUCaGUGGGg---CGGUGGuUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 36620 0.69 0.608234
Target:  5'- cCUuGcCGCCCgCGCCGCCcGCAAggcCCGCg -3'
miRNA:   3'- -GAuCaGUGGG-GCGGUGGuUGUU---GGUG- -5'
23342 3' -55 NC_005259.1 + 56269 0.69 0.615869
Target:  5'- -gAG-CGCCgCCGCCcggcccguaucggcACCAGCAgACCACg -3'
miRNA:   3'- gaUCaGUGG-GGCGG--------------UGGUUGU-UGGUG- -5'
23342 3' -55 NC_005259.1 + 38036 0.69 0.623511
Target:  5'- uUGGUgUACCCgGCCACCAcacccgauccugccgACgAGCCGCc -3'
miRNA:   3'- gAUCA-GUGGGgCGGUGGU---------------UG-UUGGUG- -5'
23342 3' -55 NC_005259.1 + 46369 0.68 0.630064
Target:  5'- aUGGcacCGCCCgGCC-CCAucucacGCAGCCGCg -3'
miRNA:   3'- gAUCa--GUGGGgCGGuGGU------UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 66740 0.68 0.630064
Target:  5'- -cGGUCaggcugaugcuGCCCgGCCuGCCAGuCGACCGCc -3'
miRNA:   3'- gaUCAG-----------UGGGgCGG-UGGUU-GUUGGUG- -5'
23342 3' -55 NC_005259.1 + 60267 0.68 0.630064
Target:  5'- gCUGGcCACCagCGCUGCCgGGCGGCCAUc -3'
miRNA:   3'- -GAUCaGUGGg-GCGGUGG-UUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 57732 0.68 0.630064
Target:  5'- -cAGUCACCCaCGUaCugCAACGcgauguugcgaGCCGCg -3'
miRNA:   3'- gaUCAGUGGG-GCG-GugGUUGU-----------UGGUG- -5'
23342 3' -55 NC_005259.1 + 12894 0.68 0.630064
Target:  5'- -cGGUCACCuaCCGUCggaucaugACCAACAACCu- -3'
miRNA:   3'- gaUCAGUGG--GGCGG--------UGGUUGUUGGug -5'
23342 3' -55 NC_005259.1 + 21820 0.68 0.640986
Target:  5'- -cGGUCACCacaCCaaCACCAGCAACaCACc -3'
miRNA:   3'- gaUCAGUGG---GGcgGUGGUUGUUG-GUG- -5'
23342 3' -55 NC_005259.1 + 7578 0.68 0.640986
Target:  5'- ---uUCGCgCCGCCGCCGcCGACCuCa -3'
miRNA:   3'- gaucAGUGgGGCGGUGGUuGUUGGuG- -5'
23342 3' -55 NC_005259.1 + 28568 0.68 0.640986
Target:  5'- ---aUCAcCCCCGCCACCGccucugacGCcGCCAUc -3'
miRNA:   3'- gaucAGU-GGGGCGGUGGU--------UGuUGGUG- -5'
23342 3' -55 NC_005259.1 + 26058 0.68 0.6519
Target:  5'- uUGGcCAUgCCGCCGCCgAGCAgucccccgagGCCGCc -3'
miRNA:   3'- gAUCaGUGgGGCGGUGG-UUGU----------UGGUG- -5'
23342 3' -55 NC_005259.1 + 45398 0.68 0.6519
Target:  5'- -gGGUCGCCgCCGagcgCGCUGAUGGCCGCc -3'
miRNA:   3'- gaUCAGUGG-GGCg---GUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 42231 0.68 0.6519
Target:  5'- --cGUC-CCCgGCCAUCu-CGACCACc -3'
miRNA:   3'- gauCAGuGGGgCGGUGGuuGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 19879 0.68 0.6519
Target:  5'- -gGGaUCGCCgaCGCCGCgcccaagaugugCGACAACCACg -3'
miRNA:   3'- gaUC-AGUGGg-GCGGUG------------GUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 6607 0.68 0.6519
Target:  5'- -cGGaUCACCCCGUCgaucaagauuGCCAGCGgguCCGCc -3'
miRNA:   3'- gaUC-AGUGGGGCGG----------UGGUUGUu--GGUG- -5'
23342 3' -55 NC_005259.1 + 48140 0.68 0.662796
Target:  5'- ----cCACCgCCGCC-CCGGCcACCACc -3'
miRNA:   3'- gaucaGUGG-GGCGGuGGUUGuUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.