miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23346 3' -55.8 NC_005259.1 + 562 0.68 0.639477
Target:  5'- uGACCCGcacCACGGCGUggGgGUCGaGCu -3'
miRNA:   3'- gCUGGGCuc-GUGCCGUA--UgCAGCaCG- -5'
23346 3' -55.8 NC_005259.1 + 1412 1.12 0.000861
Target:  5'- aCGACCCGAGCACGGCAUACGUCGUGCu -3'
miRNA:   3'- -GCUGGGCUCGUGCCGUAUGCAGCACG- -5'
23346 3' -55.8 NC_005259.1 + 2142 0.66 0.78373
Target:  5'- aGACCCGcacGGUGCuGGCcagcgGCGUCGaGCc -3'
miRNA:   3'- gCUGGGC---UCGUG-CCGua---UGCAGCaCG- -5'
23346 3' -55.8 NC_005259.1 + 3322 0.66 0.764237
Target:  5'- uCGACgUGAGCGCcgGGCAgcucugCGUGCu -3'
miRNA:   3'- -GCUGgGCUCGUG--CCGUaugca-GCACG- -5'
23346 3' -55.8 NC_005259.1 + 4683 0.66 0.79326
Target:  5'- uGGCUCGGGCcgacagcuCGGCcc-CGUgGUGCg -3'
miRNA:   3'- gCUGGGCUCGu-------GCCGuauGCAgCACG- -5'
23346 3' -55.8 NC_005259.1 + 5580 0.68 0.650141
Target:  5'- cCGugCCGuGCugGGaAUGCGgaGUGCu -3'
miRNA:   3'- -GCugGGCuCGugCCgUAUGCagCACG- -5'
23346 3' -55.8 NC_005259.1 + 7401 0.67 0.692544
Target:  5'- aGACCCGca-ACGGCAUccuCGUCGccgucgGCg -3'
miRNA:   3'- gCUGGGCucgUGCCGUAu--GCAGCa-----CG- -5'
23346 3' -55.8 NC_005259.1 + 10604 0.67 0.692544
Target:  5'- uGACCUGAGCgagcacACGuGUggGUGCGUCGagGCc -3'
miRNA:   3'- gCUGGGCUCG------UGC-CG--UAUGCAGCa-CG- -5'
23346 3' -55.8 NC_005259.1 + 12368 0.68 0.671412
Target:  5'- gCGACCgagguagucggCGAGaGCGGCAU-CGaacUCGUGCa -3'
miRNA:   3'- -GCUGG-----------GCUCgUGCCGUAuGC---AGCACG- -5'
23346 3' -55.8 NC_005259.1 + 14067 0.68 0.682
Target:  5'- aGACC--AGCACGGCGgugGCcuaCGUGCg -3'
miRNA:   3'- gCUGGgcUCGUGCCGUa--UGca-GCACG- -5'
23346 3' -55.8 NC_005259.1 + 14200 0.72 0.423059
Target:  5'- --cCCCGAGCAggcCGGgAUcaacuacccggcgcGCGUCGUGCg -3'
miRNA:   3'- gcuGGGCUCGU---GCCgUA--------------UGCAGCACG- -5'
23346 3' -55.8 NC_005259.1 + 17053 0.66 0.774053
Target:  5'- gCGAcCCCGAG-GCGGUGcGCGcauUUGUGCg -3'
miRNA:   3'- -GCU-GGGCUCgUGCCGUaUGC---AGCACG- -5'
23346 3' -55.8 NC_005259.1 + 19103 0.75 0.301688
Target:  5'- gCGAacucaCCGGcGCugGuGUGUGCGUCGUGCa -3'
miRNA:   3'- -GCUg----GGCU-CGugC-CGUAUGCAGCACG- -5'
23346 3' -55.8 NC_005259.1 + 19406 0.68 0.671412
Target:  5'- uCGACCCGAuGCAgGGag-AaaUCGUGCu -3'
miRNA:   3'- -GCUGGGCU-CGUgCCguaUgcAGCACG- -5'
23346 3' -55.8 NC_005259.1 + 20520 0.68 0.671412
Target:  5'- uGuCCCGAGCACGG-GUGCG-C-UGCc -3'
miRNA:   3'- gCuGGGCUCGUGCCgUAUGCaGcACG- -5'
23346 3' -55.8 NC_005259.1 + 23677 0.7 0.560946
Target:  5'- cCGAcCCCGAGCA-GGCGcacgcagacuaccGCGUCGUGa -3'
miRNA:   3'- -GCU-GGGCUCGUgCCGUa------------UGCAGCACg -5'
23346 3' -55.8 NC_005259.1 + 25264 0.7 0.544247
Target:  5'- ---aCCGAGUACGGCAcgAUGgccacCGUGCa -3'
miRNA:   3'- gcugGGCUCGUGCCGUa-UGCa----GCACG- -5'
23346 3' -55.8 NC_005259.1 + 26353 0.66 0.764237
Target:  5'- uCGGgCCGAGCuGCGcGUAgAUGUCGgugGCg -3'
miRNA:   3'- -GCUgGGCUCG-UGC-CGUaUGCAGCa--CG- -5'
23346 3' -55.8 NC_005259.1 + 26403 0.72 0.454069
Target:  5'- cCGACgCCGGGCGCGGCGgugcCGcCGUagaacGCa -3'
miRNA:   3'- -GCUG-GGCUCGUGCCGUau--GCaGCA-----CG- -5'
23346 3' -55.8 NC_005259.1 + 28409 0.66 0.758286
Target:  5'- -uGCCCGcGCGCaugggcauguaccucGGCAUACGUgucacgguagaCGUGCc -3'
miRNA:   3'- gcUGGGCuCGUG---------------CCGUAUGCA-----------GCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.