Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 29392 | 0.66 | 0.763248 |
Target: 5'- cCGACCUacaccgaGGGCcuCGGCGaGC-UCGUGCg -3' miRNA: 3'- -GCUGGG-------CUCGu-GCCGUaUGcAGCACG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 32917 | 0.7 | 0.52361 |
Target: 5'- cCGGCCCGcucgGGCGCGGCGguauCGUCa--- -3' miRNA: 3'- -GCUGGGC----UCGUGCCGUau--GCAGcacg -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 34023 | 0.72 | 0.416646 |
Target: 5'- cCGGCCuCG---GCGGCGUGCGUCG-GCg -3' miRNA: 3'- -GCUGG-GCucgUGCCGUAUGCAGCaCG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 36237 | 0.66 | 0.78373 |
Target: 5'- uGGCC--AGCGCGaGCGccUGCGUCG-GCa -3' miRNA: 3'- gCUGGgcUCGUGC-CGU--AUGCAGCaCG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 37943 | 0.66 | 0.751288 |
Target: 5'- uCGACCacguagauaccguuCGGGCucuugguCGGCAgUGCGUCGUacuGCg -3' miRNA: 3'- -GCUGG--------------GCUCGu------GCCGU-AUGCAGCA---CG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 38067 | 0.67 | 0.734067 |
Target: 5'- cCGACgagccgccaUCGAGCAUGGCccACGUCGa-- -3' miRNA: 3'- -GCUG---------GGCUCGUGCCGuaUGCAGCacg -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 39250 | 0.67 | 0.692544 |
Target: 5'- aGGCCCGAGauauagcuuuGCGGCA----UCGUGCc -3' miRNA: 3'- gCUGGGCUCg---------UGCCGUaugcAGCACG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 46592 | 0.66 | 0.754294 |
Target: 5'- -cGCCCGAG-GCGaGCAgcGCGUCGUugGCg -3' miRNA: 3'- gcUGGGCUCgUGC-CGUa-UGCAGCA--CG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 46684 | 0.67 | 0.744234 |
Target: 5'- uCGGCCUGAGCcgccGCcGCGUcccucgacGCG-CGUGCa -3' miRNA: 3'- -GCUGGGCUCG----UGcCGUA--------UGCaGCACG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 47695 | 0.66 | 0.754294 |
Target: 5'- -uGCCCGGuuggauGCGCGGCAgugccuUGUCG-GCg -3' miRNA: 3'- gcUGGGCU------CGUGCCGUau----GCAGCaCG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 49187 | 0.67 | 0.703032 |
Target: 5'- cCGAUCCGAaaggaccgGgGCGGUuucCGUUGUGCg -3' miRNA: 3'- -GCUGGGCU--------CgUGCCGuauGCAGCACG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 49606 | 0.7 | 0.569348 |
Target: 5'- uCGACCuCGGGCAgcucaucaucgucauCGGCGgcagccGCGUCG-GCg -3' miRNA: 3'- -GCUGG-GCUCGU---------------GCCGUa-----UGCAGCaCG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 50231 | 0.73 | 0.389847 |
Target: 5'- uCGAUCCGAGCGCGGgc-GCGgaUCGUGg -3' miRNA: 3'- -GCUGGGCUCGUGCCguaUGC--AGCACg -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 50256 | 0.66 | 0.751288 |
Target: 5'- nGGCCaaCGGGCuACucgcugucgucgguGGCGggaACGUCGUGCa -3' miRNA: 3'- gCUGG--GCUCG-UG--------------CCGUa--UGCAGCACG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 50990 | 0.7 | 0.544247 |
Target: 5'- gGugUCGAGuCAcCGGCGaaaaaccggacgUugGUCGUGCu -3' miRNA: 3'- gCugGGCUC-GU-GCCGU------------AugCAGCACG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 53011 | 0.66 | 0.78373 |
Target: 5'- uCGA-CUGGGCGCuGCGgugGCGUCGagGCa -3' miRNA: 3'- -GCUgGGCUCGUGcCGUa--UGCAGCa-CG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 55362 | 0.69 | 0.607485 |
Target: 5'- -cGCCUGAGCgACGGCAgcCGUgaucaGUGCc -3' miRNA: 3'- gcUGGGCUCG-UGCCGUauGCAg----CACG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 55714 | 0.67 | 0.723805 |
Target: 5'- uGGCCgCGAGCACcucgcccuuguuGGCAagcUugGUgGUGUc -3' miRNA: 3'- gCUGG-GCUCGUG------------CCGU---AugCAgCACG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 57306 | 0.67 | 0.723805 |
Target: 5'- aCGACaUCGAGCAcCGGCGgu-GUCGgUGUg -3' miRNA: 3'- -GCUG-GGCUCGU-GCCGUaugCAGC-ACG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 58353 | 0.67 | 0.744234 |
Target: 5'- uGGCCuCGGGCACGucGCAgaaGUCGUagaGCu -3' miRNA: 3'- gCUGG-GCUCGUGC--CGUaugCAGCA---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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