Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 34023 | 0.72 | 0.416646 |
Target: 5'- cCGGCCuCG---GCGGCGUGCGUCG-GCg -3' miRNA: 3'- -GCUGG-GCucgUGCCGUAUGCAGCaCG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 50231 | 0.73 | 0.389847 |
Target: 5'- uCGAUCCGAGCGCGGgc-GCGgaUCGUGg -3' miRNA: 3'- -GCUGGGCUCGUGCCguaUGC--AGCACg -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 19103 | 0.75 | 0.301688 |
Target: 5'- gCGAacucaCCGGcGCugGuGUGUGCGUCGUGCa -3' miRNA: 3'- -GCUg----GGCU-CGugC-CGUAUGCAGCACG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 61066 | 0.79 | 0.168297 |
Target: 5'- uGugCCGGGCAuCGGCAUagGCGUCGUcgGCc -3' miRNA: 3'- gCugGGCUCGU-GCCGUA--UGCAGCA--CG- -5' |
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23346 | 3' | -55.8 | NC_005259.1 | + | 1412 | 1.12 | 0.000861 |
Target: 5'- aCGACCCGAGCACGGCAUACGUCGUGCu -3' miRNA: 3'- -GCUGGGCUCGUGCCGUAUGCAGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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