miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23350 3' -56.1 NC_005259.1 + 35243 0.66 0.748728
Target:  5'- uGCAgucugcGCACUCGCGuuguucGCGCCCGCcgcGCCGg -3'
miRNA:   3'- cUGU------UGUGGGUGC------CGUGGGUGu--UGGC- -5'
23350 3' -56.1 NC_005259.1 + 37922 0.66 0.748728
Target:  5'- -gUAACGCCCACcGCucACCCcuCGACCa -3'
miRNA:   3'- cuGUUGUGGGUGcCG--UGGGu-GUUGGc -5'
23350 3' -56.1 NC_005259.1 + 4717 0.66 0.748728
Target:  5'- uGACcGCGCCCGagaaaGCCCGCAaggACCGg -3'
miRNA:   3'- -CUGuUGUGGGUgccg-UGGGUGU---UGGC- -5'
23350 3' -56.1 NC_005259.1 + 48840 0.66 0.74771
Target:  5'- ---cGCACCC-CGGaagagauCGCCCGCAACUa -3'
miRNA:   3'- cuguUGUGGGuGCC-------GUGGGUGUUGGc -5'
23350 3' -56.1 NC_005259.1 + 41117 0.66 0.74771
Target:  5'- uGACGAUGUCgGCGGUGCCCGCGucgcgcaGCCu -3'
miRNA:   3'- -CUGUUGUGGgUGCCGUGGGUGU-------UGGc -5'
23350 3' -56.1 NC_005259.1 + 3819 0.66 0.7385
Target:  5'- gGugAcCACCCACGGgGCC-ACGACg- -3'
miRNA:   3'- -CugUuGUGGGUGCCgUGGgUGUUGgc -5'
23350 3' -56.1 NC_005259.1 + 39756 0.66 0.7385
Target:  5'- cGACAGCGgCagcaGCGGCAgCCUGCuGCUGg -3'
miRNA:   3'- -CUGUUGUgGg---UGCCGU-GGGUGuUGGC- -5'
23350 3' -56.1 NC_005259.1 + 12167 0.66 0.7385
Target:  5'- cGGCAcCGCCCuCGGUcgaACCUGCcgGACCGu -3'
miRNA:   3'- -CUGUuGUGGGuGCCG---UGGGUG--UUGGC- -5'
23350 3' -56.1 NC_005259.1 + 966 0.66 0.7385
Target:  5'- cGCAACgGCUCaACGGCgacgagacACCgGCAGCCGu -3'
miRNA:   3'- cUGUUG-UGGG-UGCCG--------UGGgUGUUGGC- -5'
23350 3' -56.1 NC_005259.1 + 42291 0.66 0.7385
Target:  5'- -cCAugACCCACa-CGCCCGCGaacucuGCCGa -3'
miRNA:   3'- cuGUugUGGGUGccGUGGGUGU------UGGC- -5'
23350 3' -56.1 NC_005259.1 + 48401 0.66 0.7385
Target:  5'- -cCGACGCCCGCcGuCGagucaCCGCGACCGc -3'
miRNA:   3'- cuGUUGUGGGUGcC-GUg----GGUGUUGGC- -5'
23350 3' -56.1 NC_005259.1 + 9126 0.66 0.7385
Target:  5'- ---cGCGCCC-CGGUACggGCAGCCGu -3'
miRNA:   3'- cuguUGUGGGuGCCGUGggUGUUGGC- -5'
23350 3' -56.1 NC_005259.1 + 65626 0.66 0.737471
Target:  5'- aGCAugGCCCAUGaucggcuGCACCUuucuCAGCCc -3'
miRNA:   3'- cUGUugUGGGUGC-------CGUGGGu---GUUGGc -5'
23350 3' -56.1 NC_005259.1 + 19541 0.66 0.728168
Target:  5'- uGCAG-GCCgACGcGUauGCCCGCAGCCGu -3'
miRNA:   3'- cUGUUgUGGgUGC-CG--UGGGUGUUGGC- -5'
23350 3' -56.1 NC_005259.1 + 34287 0.66 0.728168
Target:  5'- aGugGAuCGCCCuCGGggaucacgACCCACGACCa -3'
miRNA:   3'- -CugUU-GUGGGuGCCg-------UGGGUGUUGGc -5'
23350 3' -56.1 NC_005259.1 + 8371 0.66 0.72713
Target:  5'- cGGCGGCGgCCuCGGCAUCgGCGagagccucggcgaGCCGg -3'
miRNA:   3'- -CUGUUGUgGGuGCCGUGGgUGU-------------UGGC- -5'
23350 3' -56.1 NC_005259.1 + 47952 0.66 0.717745
Target:  5'- cGGCggUGCCgAUGGCcgccgcgccGCCCGCGaauauGCCGg -3'
miRNA:   3'- -CUGuuGUGGgUGCCG---------UGGGUGU-----UGGC- -5'
23350 3' -56.1 NC_005259.1 + 30221 0.66 0.717745
Target:  5'- aGAgAAuCACCCACGaGCG-CCGCAcCCGu -3'
miRNA:   3'- -CUgUU-GUGGGUGC-CGUgGGUGUuGGC- -5'
23350 3' -56.1 NC_005259.1 + 35455 0.66 0.717745
Target:  5'- ---cGCGCCCAcCGGCACCgccaGCA-CCGc -3'
miRNA:   3'- cuguUGUGGGU-GCCGUGGg---UGUuGGC- -5'
23350 3' -56.1 NC_005259.1 + 18196 0.66 0.717745
Target:  5'- cGACAucGCACCCAagcaGGUcgACCC-CGAUCa -3'
miRNA:   3'- -CUGU--UGUGGGUg---CCG--UGGGuGUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.