Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23351 | 5' | -56 | NC_005259.1 | + | 333 | 1.1 | 0.001184 |
Target: 5'- aCGCACACCUCCGACAACCACGACCGAa -3' miRNA: 3'- -GCGUGUGGAGGCUGUUGGUGCUGGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 46759 | 0.79 | 0.168297 |
Target: 5'- gCGCcgACACCUgcgCCGACAGCCGCGcccGCCGGg -3' miRNA: 3'- -GCG--UGUGGA---GGCUGUUGGUGC---UGGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 17035 | 0.75 | 0.294483 |
Target: 5'- gCGCugGCa-UCGACAACCGCGACCc- -3' miRNA: 3'- -GCGugUGgaGGCUGUUGGUGCUGGcu -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 30137 | 0.74 | 0.339747 |
Target: 5'- uGCgAUACCUCgGGCAGCU-CGACCGGg -3' miRNA: 3'- gCG-UGUGGAGgCUGUUGGuGCUGGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 22608 | 0.73 | 0.381168 |
Target: 5'- uGCACGCCgCCGACcGCCGC--CCGAu -3' miRNA: 3'- gCGUGUGGaGGCUGuUGGUGcuGGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 68214 | 0.72 | 0.407588 |
Target: 5'- uGCuuCugCUCgGugGACCACGACCu- -3' miRNA: 3'- gCGu-GugGAGgCugUUGGUGCUGGcu -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 3471 | 0.71 | 0.441704 |
Target: 5'- uGCcuCACCUCCGAgGACCacacccugccucacGCGACCa- -3' miRNA: 3'- gCGu-GUGGAGGCUgUUGG--------------UGCUGGcu -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 12322 | 0.71 | 0.444541 |
Target: 5'- uGCGCACCgCCGcCAGCuCACGcACCGc -3' miRNA: 3'- gCGUGUGGaGGCuGUUG-GUGC-UGGCu -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 20643 | 0.71 | 0.444541 |
Target: 5'- uCGCgACACgUUCGGCGgcACCGgGGCCGAg -3' miRNA: 3'- -GCG-UGUGgAGGCUGU--UGGUgCUGGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 45731 | 0.71 | 0.473452 |
Target: 5'- uGCGCACCaCCGA-GGCCGCGcACCGc -3' miRNA: 3'- gCGUGUGGaGGCUgUUGGUGC-UGGCu -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 18566 | 0.71 | 0.483299 |
Target: 5'- cCGUACGCCgccgCCGACc-CCGagcaGACCGAc -3' miRNA: 3'- -GCGUGUGGa---GGCUGuuGGUg---CUGGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 64772 | 0.71 | 0.493242 |
Target: 5'- gGUGCGCCU-CGGCGGCCcgcuGCGACUGGc -3' miRNA: 3'- gCGUGUGGAgGCUGUUGG----UGCUGGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 26127 | 0.71 | 0.493242 |
Target: 5'- cCGguCGCCggUCCGACGccGCCGaGGCCGAg -3' miRNA: 3'- -GCguGUGG--AGGCUGU--UGGUgCUGGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 33278 | 0.7 | 0.513403 |
Target: 5'- gCGCACguGCCUCCacuGCAuCCACGGCUGc -3' miRNA: 3'- -GCGUG--UGGAGGc--UGUuGGUGCUGGCu -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 1919 | 0.7 | 0.513403 |
Target: 5'- aGCGCGCCgccccaaaaugCCGACGGuCCAC-ACCGGc -3' miRNA: 3'- gCGUGUGGa----------GGCUGUU-GGUGcUGGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 40163 | 0.7 | 0.52361 |
Target: 5'- uGCcCGCC-CCGGCAGCU-CGACCGu -3' miRNA: 3'- gCGuGUGGaGGCUGUUGGuGCUGGCu -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 46942 | 0.7 | 0.538027 |
Target: 5'- cCGcCGCGCCgCCGACcgcguugagcuuguuGGCCACGccGCCGAu -3' miRNA: 3'- -GC-GUGUGGaGGCUG---------------UUGGUGC--UGGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 19654 | 0.7 | 0.544248 |
Target: 5'- gGCAcCGCCUCgGGCAGCCGCuacauccCCGGu -3' miRNA: 3'- gCGU-GUGGAGgCUGUUGGUGcu-----GGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 36243 | 0.69 | 0.565143 |
Target: 5'- gCGCgaGCGCCUgcgUCGGCAgcGCCACG-CCGGa -3' miRNA: 3'- -GCG--UGUGGA---GGCUGU--UGGUGCuGGCU- -5' |
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23351 | 5' | -56 | NC_005259.1 | + | 48125 | 0.69 | 0.586242 |
Target: 5'- aGCACACCgCCu-CGACCACcGCCGc -3' miRNA: 3'- gCGUGUGGaGGcuGUUGGUGcUGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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