miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23351 5' -56 NC_005259.1 + 64594 0.66 0.78469
Target:  5'- aGCACACCaacgaggugacugaCGGCGAgCGCGACgGGc -3'
miRNA:   3'- gCGUGUGGag------------GCUGUUgGUGCUGgCU- -5'
23351 5' -56 NC_005259.1 + 26127 0.71 0.493242
Target:  5'- cCGguCGCCggUCCGACGccGCCGaGGCCGAg -3'
miRNA:   3'- -GCguGUGG--AGGCUGU--UGGUgCUGGCU- -5'
23351 5' -56 NC_005259.1 + 33278 0.7 0.513403
Target:  5'- gCGCACguGCCUCCacuGCAuCCACGGCUGc -3'
miRNA:   3'- -GCGUG--UGGAGGc--UGUuGGUGCUGGCu -5'
23351 5' -56 NC_005259.1 + 1919 0.7 0.513403
Target:  5'- aGCGCGCCgccccaaaaugCCGACGGuCCAC-ACCGGc -3'
miRNA:   3'- gCGUGUGGa----------GGCUGUU-GGUGcUGGCU- -5'
23351 5' -56 NC_005259.1 + 40163 0.7 0.52361
Target:  5'- uGCcCGCC-CCGGCAGCU-CGACCGu -3'
miRNA:   3'- gCGuGUGGaGGCUGUUGGuGCUGGCu -5'
23351 5' -56 NC_005259.1 + 46942 0.7 0.538027
Target:  5'- cCGcCGCGCCgCCGACcgcguugagcuuguuGGCCACGccGCCGAu -3'
miRNA:   3'- -GC-GUGUGGaGGCUG---------------UUGGUGC--UGGCU- -5'
23351 5' -56 NC_005259.1 + 19654 0.7 0.544248
Target:  5'- gGCAcCGCCUCgGGCAGCCGCuacauccCCGGu -3'
miRNA:   3'- gCGU-GUGGAGgCUGUUGGUGcu-----GGCU- -5'
23351 5' -56 NC_005259.1 + 36243 0.69 0.565143
Target:  5'- gCGCgaGCGCCUgcgUCGGCAgcGCCACG-CCGGa -3'
miRNA:   3'- -GCG--UGUGGA---GGCUGU--UGGUGCuGGCU- -5'
23351 5' -56 NC_005259.1 + 48125 0.69 0.586242
Target:  5'- aGCACACCgCCu-CGACCACcGCCGc -3'
miRNA:   3'- gCGUGUGGaGGcuGUUGGUGcUGGCu -5'
23351 5' -56 NC_005259.1 + 64772 0.71 0.493242
Target:  5'- gGUGCGCCU-CGGCGGCCcgcuGCGACUGGc -3'
miRNA:   3'- gCGUGUGGAgGCUGUUGG----UGCUGGCU- -5'
23351 5' -56 NC_005259.1 + 18566 0.71 0.483299
Target:  5'- cCGUACGCCgccgCCGACc-CCGagcaGACCGAc -3'
miRNA:   3'- -GCGUGUGGa---GGCUGuuGGUg---CUGGCU- -5'
23351 5' -56 NC_005259.1 + 45731 0.71 0.473452
Target:  5'- uGCGCACCaCCGA-GGCCGCGcACCGc -3'
miRNA:   3'- gCGUGUGGaGGCUgUUGGUGC-UGGCu -5'
23351 5' -56 NC_005259.1 + 46759 0.79 0.168297
Target:  5'- gCGCcgACACCUgcgCCGACAGCCGCGcccGCCGGg -3'
miRNA:   3'- -GCG--UGUGGA---GGCUGUUGGUGC---UGGCU- -5'
23351 5' -56 NC_005259.1 + 17035 0.75 0.294483
Target:  5'- gCGCugGCa-UCGACAACCGCGACCc- -3'
miRNA:   3'- -GCGugUGgaGGCUGUUGGUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 30137 0.74 0.339747
Target:  5'- uGCgAUACCUCgGGCAGCU-CGACCGGg -3'
miRNA:   3'- gCG-UGUGGAGgCUGUUGGuGCUGGCU- -5'
23351 5' -56 NC_005259.1 + 22608 0.73 0.381168
Target:  5'- uGCACGCCgCCGACcGCCGC--CCGAu -3'
miRNA:   3'- gCGUGUGGaGGCUGuUGGUGcuGGCU- -5'
23351 5' -56 NC_005259.1 + 68214 0.72 0.407588
Target:  5'- uGCuuCugCUCgGugGACCACGACCu- -3'
miRNA:   3'- gCGu-GugGAGgCugUUGGUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 3471 0.71 0.441704
Target:  5'- uGCcuCACCUCCGAgGACCacacccugccucacGCGACCa- -3'
miRNA:   3'- gCGu-GUGGAGGCUgUUGG--------------UGCUGGcu -5'
23351 5' -56 NC_005259.1 + 12322 0.71 0.444541
Target:  5'- uGCGCACCgCCGcCAGCuCACGcACCGc -3'
miRNA:   3'- gCGUGUGGaGGCuGUUG-GUGC-UGGCu -5'
23351 5' -56 NC_005259.1 + 20643 0.71 0.444541
Target:  5'- uCGCgACACgUUCGGCGgcACCGgGGCCGAg -3'
miRNA:   3'- -GCG-UGUGgAGGCUGU--UGGUgCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.