miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23351 5' -56 NC_005259.1 + 237 0.68 0.639478
Target:  5'- aCGCAgCGaCUCCGcGCAGCCACGGCa-- -3'
miRNA:   3'- -GCGU-GUgGAGGC-UGUUGGUGCUGgcu -5'
23351 5' -56 NC_005259.1 + 333 1.1 0.001184
Target:  5'- aCGCACACCUCCGACAACCACGACCGAa -3'
miRNA:   3'- -GCGUGUGGAGGCUGUUGGUGCUGGCU- -5'
23351 5' -56 NC_005259.1 + 1919 0.7 0.513403
Target:  5'- aGCGCGCCgccccaaaaugCCGACGGuCCAC-ACCGGc -3'
miRNA:   3'- gCGUGUGGa----------GGCUGUU-GGUGcUGGCU- -5'
23351 5' -56 NC_005259.1 + 3001 0.67 0.692544
Target:  5'- uGCGCGCCgCCGAC-GCCAUcACCc- -3'
miRNA:   3'- gCGUGUGGaGGCUGuUGGUGcUGGcu -5'
23351 5' -56 NC_005259.1 + 3471 0.71 0.441704
Target:  5'- uGCcuCACCUCCGAgGACCacacccugccucacGCGACCa- -3'
miRNA:   3'- gCGu-GUGGAGGCUgUUGG--------------UGCUGGcu -5'
23351 5' -56 NC_005259.1 + 5878 0.66 0.774053
Target:  5'- aGCACAUCaacgaucaugCCGuCGACCACG-UCGAg -3'
miRNA:   3'- gCGUGUGGa---------GGCuGUUGGUGCuGGCU- -5'
23351 5' -56 NC_005259.1 + 6219 0.68 0.628808
Target:  5'- aGC-CGCCgcgCCGAC-ACCGUGACCGu -3'
miRNA:   3'- gCGuGUGGa--GGCUGuUGGUGCUGGCu -5'
23351 5' -56 NC_005259.1 + 9420 0.69 0.59685
Target:  5'- gCGcCACACCguugUCGAgCAGCCACacGCCGAg -3'
miRNA:   3'- -GC-GUGUGGa---GGCU-GUUGGUGc-UGGCU- -5'
23351 5' -56 NC_005259.1 + 11950 0.68 0.650141
Target:  5'- uCGCGCAgC-CCGGCGAgCACG-UCGAa -3'
miRNA:   3'- -GCGUGUgGaGGCUGUUgGUGCuGGCU- -5'
23351 5' -56 NC_005259.1 + 12322 0.71 0.444541
Target:  5'- uGCGCACCgCCGcCAGCuCACGcACCGc -3'
miRNA:   3'- gCGUGUGGaGGCuGUUG-GUGC-UGGCu -5'
23351 5' -56 NC_005259.1 + 12347 0.67 0.692544
Target:  5'- nGC-CGCCUcgaaaCCGGCc-UCGCGACCGAg -3'
miRNA:   3'- gCGuGUGGA-----GGCUGuuGGUGCUGGCU- -5'
23351 5' -56 NC_005259.1 + 14508 0.66 0.780842
Target:  5'- cCGCAUGCacaCCGGCGAgCACGcggugcguuucgguGCCGAg -3'
miRNA:   3'- -GCGUGUGga-GGCUGUUgGUGC--------------UGGCU- -5'
23351 5' -56 NC_005259.1 + 15028 0.66 0.774053
Target:  5'- uCGaCAguCCgaucuaCCGGCAggguGCCAUGGCCGAu -3'
miRNA:   3'- -GC-GUguGGa-----GGCUGU----UGGUGCUGGCU- -5'
23351 5' -56 NC_005259.1 + 15149 0.66 0.774053
Target:  5'- gGC-CACCUCgGugG-CCGaGGCCGAg -3'
miRNA:   3'- gCGuGUGGAGgCugUuGGUgCUGGCU- -5'
23351 5' -56 NC_005259.1 + 16811 0.68 0.650141
Target:  5'- uCGCGCucgggGCCggggucaugaUCCGACAcaaggcgggugGCCAUGACUGAu -3'
miRNA:   3'- -GCGUG-----UGG----------AGGCUGU-----------UGGUGCUGGCU- -5'
23351 5' -56 NC_005259.1 + 16952 0.68 0.639478
Target:  5'- aCGCuCGCCauUCCGACAccaacaACCACGAaaCGAa -3'
miRNA:   3'- -GCGuGUGG--AGGCUGU------UGGUGCUg-GCU- -5'
23351 5' -56 NC_005259.1 + 17035 0.75 0.294483
Target:  5'- gCGCugGCa-UCGACAACCGCGACCc- -3'
miRNA:   3'- -GCGugUGgaGGCUGUUGGUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 17767 0.68 0.668228
Target:  5'- cCGCGCGCCgggCCGAgCGcaccgagcgugcgcACCGCGAUagCGAg -3'
miRNA:   3'- -GCGUGUGGa--GGCU-GU--------------UGGUGCUG--GCU- -5'
23351 5' -56 NC_005259.1 + 18024 0.69 0.59685
Target:  5'- uGCACAUCUggaCUGACAACCccgGCGAgCCGu -3'
miRNA:   3'- gCGUGUGGA---GGCUGUUGG---UGCU-GGCu -5'
23351 5' -56 NC_005259.1 + 18264 0.66 0.754294
Target:  5'- cCGCGCcugaACCUgaGACGACCucgACGcCCGAc -3'
miRNA:   3'- -GCGUG----UGGAggCUGUUGG---UGCuGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.