miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23353 5' -55.5 NC_005259.1 + 1541 0.66 0.810321
Target:  5'- gCAUCAUCGGGG-CCgCGUU-CgGGGCGg -3'
miRNA:   3'- -GUAGUAGCUCUaGG-GCAGcGgCCUGC- -5'
23353 5' -55.5 NC_005259.1 + 16418 0.66 0.801082
Target:  5'- --cCAcCGAGGUgCCCGUCGagcggcccaaaCCGGGCa -3'
miRNA:   3'- guaGUaGCUCUA-GGGCAGC-----------GGCCUGc -5'
23353 5' -55.5 NC_005259.1 + 49706 0.66 0.800149
Target:  5'- uGUCggUGAGAUCCgGcagauauUCGgCGGGCGg -3'
miRNA:   3'- gUAGuaGCUCUAGGgC-------AGCgGCCUGC- -5'
23353 5' -55.5 NC_005259.1 + 8385 0.66 0.791677
Target:  5'- gCAUCggCGAGAgCCuCGgcgaGCCGGGCc -3'
miRNA:   3'- -GUAGuaGCUCUaGG-GCag--CGGCCUGc -5'
23353 5' -55.5 NC_005259.1 + 43667 0.66 0.791677
Target:  5'- uGUCGUUGccGAUCacaCCGcCGCCGGugGc -3'
miRNA:   3'- gUAGUAGCu-CUAG---GGCaGCGGCCugC- -5'
23353 5' -55.5 NC_005259.1 + 13671 0.66 0.782115
Target:  5'- aCAUCGacggugugcUCGuGGaCCCGUgGCCGGuCGa -3'
miRNA:   3'- -GUAGU---------AGCuCUaGGGCAgCGGCCuGC- -5'
23353 5' -55.5 NC_005259.1 + 62715 0.66 0.782115
Target:  5'- gAUCAggcggGGGAUCUCGcUCGaCCGGACc -3'
miRNA:   3'- gUAGUag---CUCUAGGGC-AGC-GGCCUGc -5'
23353 5' -55.5 NC_005259.1 + 10291 0.67 0.761571
Target:  5'- uCGUCAUCGAGGUUggaccaaUCGUCGUagucgucauCGGGCu -3'
miRNA:   3'- -GUAGUAGCUCUAG-------GGCAGCG---------GCCUGc -5'
23353 5' -55.5 NC_005259.1 + 57226 0.67 0.752591
Target:  5'- gGUUGUCGGGGUCggagauccacgUCGUUGCCGGGa- -3'
miRNA:   3'- gUAGUAGCUCUAG-----------GGCAGCGGCCUgc -5'
23353 5' -55.5 NC_005259.1 + 8073 0.67 0.752591
Target:  5'- --aCAUCGAGAUCgugCCG-CGCUGG-CGu -3'
miRNA:   3'- guaGUAGCUCUAG---GGCaGCGGCCuGC- -5'
23353 5' -55.5 NC_005259.1 + 44778 0.67 0.742506
Target:  5'- gCAUCggcgGUCGAGAaCagaCGcUCGCCGGugGc -3'
miRNA:   3'- -GUAG----UAGCUCUaGg--GC-AGCGGCCugC- -5'
23353 5' -55.5 NC_005259.1 + 47275 0.67 0.722029
Target:  5'- cCAgcgCAcCGAGcagacCgCCGUCGCCGGACa -3'
miRNA:   3'- -GUa--GUaGCUCua---G-GGCAGCGGCCUGc -5'
23353 5' -55.5 NC_005259.1 + 23704 0.67 0.711659
Target:  5'- aCcgCGUCGuGAUCg---CGCCGGACGg -3'
miRNA:   3'- -GuaGUAGCuCUAGggcaGCGGCCUGC- -5'
23353 5' -55.5 NC_005259.1 + 32666 0.67 0.711659
Target:  5'- aAUCGUCGGcAUCCgacucgcaauCGUCguaGCCGGGCGg -3'
miRNA:   3'- gUAGUAGCUcUAGG----------GCAG---CGGCCUGC- -5'
23353 5' -55.5 NC_005259.1 + 3264 0.68 0.68438
Target:  5'- gCAUCcugcUCGGGugguuUCCCGUCGCCGccucgccggucccucGGCGa -3'
miRNA:   3'- -GUAGu---AGCUCu----AGGGCAGCGGC---------------CUGC- -5'
23353 5' -55.5 NC_005259.1 + 66248 0.69 0.635446
Target:  5'- --cCAUCGAcgcagcgcggCCCG-CGCCGGGCGg -3'
miRNA:   3'- guaGUAGCUcua-------GGGCaGCGGCCUGC- -5'
23353 5' -55.5 NC_005259.1 + 26389 0.69 0.626903
Target:  5'- uGUUGcUCGcGAUUCCGaCGCCGGGCGc -3'
miRNA:   3'- gUAGU-AGCuCUAGGGCaGCGGCCUGC- -5'
23353 5' -55.5 NC_005259.1 + 49213 0.69 0.61623
Target:  5'- cCGUUGUgCGGGGUuuaCUCGUCGUCGGACu -3'
miRNA:   3'- -GUAGUA-GCUCUA---GGGCAGCGGCCUGc -5'
23353 5' -55.5 NC_005259.1 + 61529 0.69 0.60557
Target:  5'- -cUCGUCGGGAauuUCCuCGUC-UCGGGCGa -3'
miRNA:   3'- guAGUAGCUCU---AGG-GCAGcGGCCUGC- -5'
23353 5' -55.5 NC_005259.1 + 18721 0.7 0.552751
Target:  5'- gAUCAUCGGGccgCCCGgcaucgguaagUCGUCGGugGu -3'
miRNA:   3'- gUAGUAGCUCua-GGGC-----------AGCGGCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.