Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23354 | 5' | -54.5 | NC_005259.1 | + | 57702 | 0.66 | 0.804341 |
Target: 5'- uUGCcgGGCuu-GCCCGACUCGCGGGu- -3' miRNA: 3'- gAUG--UCGuguUGGGCUGGGCGUUCua -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 7182 | 0.66 | 0.794679 |
Target: 5'- --cCGGCGaguGCCCGGCCUGC-GGAc -3' miRNA: 3'- gauGUCGUgu-UGGGCUGGGCGuUCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 23664 | 0.66 | 0.764713 |
Target: 5'- -gACGGCugGACcgCCGACCCcgaGCAGGc- -3' miRNA: 3'- gaUGUCGugUUG--GGCUGGG---CGUUCua -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 12551 | 0.66 | 0.754435 |
Target: 5'- -cACGGCAUuGCCggggUGGCCCGCcAGAUc -3' miRNA: 3'- gaUGUCGUGuUGG----GCUGGGCGuUCUA- -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 28942 | 0.67 | 0.744032 |
Target: 5'- -gGCGGCACGAUCCuGCgCCGCAu--- -3' miRNA: 3'- gaUGUCGUGUUGGGcUG-GGCGUucua -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 29065 | 0.67 | 0.744032 |
Target: 5'- -cGCGGUAuCGGCCCGAUCUGCGc--- -3' miRNA: 3'- gaUGUCGU-GUUGGGCUGGGCGUucua -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 36718 | 0.67 | 0.744032 |
Target: 5'- gUGCcGCuCGACCCGccgcGCCCGcCGGGAUa -3' miRNA: 3'- gAUGuCGuGUUGGGC----UGGGC-GUUCUA- -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 3531 | 0.67 | 0.722896 |
Target: 5'- ---gGGCACGACaCCGACCacaGCcAGAUc -3' miRNA: 3'- gaugUCGUGUUG-GGCUGGg--CGuUCUA- -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 66919 | 0.67 | 0.712187 |
Target: 5'- -gGCAGCGCGcgguGCUCGACCggggugaGCGGGAc -3' miRNA: 3'- gaUGUCGUGU----UGGGCUGGg------CGUUCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 19399 | 0.67 | 0.701398 |
Target: 5'- -gGCAGCGuCGACCCGA--UGCAGGGa -3' miRNA: 3'- gaUGUCGU-GUUGGGCUggGCGUUCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 44733 | 0.68 | 0.690542 |
Target: 5'- -gGCAGCGCGcCCuCGACCgCGcCGAGGc -3' miRNA: 3'- gaUGUCGUGUuGG-GCUGG-GC-GUUCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 3134 | 0.68 | 0.690542 |
Target: 5'- -gGCAGCggACGGCaCCG-CCCGUggGAc -3' miRNA: 3'- gaUGUCG--UGUUG-GGCuGGGCGuuCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 20544 | 0.68 | 0.66867 |
Target: 5'- -cGCAGCGugguggauCAGCaCCGACCC-CGAGAUc -3' miRNA: 3'- gaUGUCGU--------GUUG-GGCUGGGcGUUCUA- -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 30191 | 0.68 | 0.66867 |
Target: 5'- -cACAGCACuacCCCGucgguGCCCGCcgcGAGAg -3' miRNA: 3'- gaUGUCGUGuu-GGGC-----UGGGCG---UUCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 66302 | 0.68 | 0.66867 |
Target: 5'- uCUGC-GCGCAugugcuGCCCGcagauguauCCCGCGAGAa -3' miRNA: 3'- -GAUGuCGUGU------UGGGCu--------GGGCGUUCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 25941 | 0.68 | 0.666474 |
Target: 5'- ---gAGCGCAcgccgguGCCCGGCCCGCcgacgccugcgauGAGAc -3' miRNA: 3'- gaugUCGUGU-------UGGGCUGGGCG-------------UUCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 57016 | 0.68 | 0.646661 |
Target: 5'- cCU-CAGCGCGGCUCGGCgCGguGGGg -3' miRNA: 3'- -GAuGUCGUGUUGGGCUGgGCguUCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 44565 | 0.69 | 0.624597 |
Target: 5'- -gGCAGCGCG--CCGACCgGCAGGc- -3' miRNA: 3'- gaUGUCGUGUugGGCUGGgCGUUCua -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 11082 | 0.69 | 0.613571 |
Target: 5'- -aGCcGUACGGCUCGACCuCGCAGGu- -3' miRNA: 3'- gaUGuCGUGUUGGGCUGG-GCGUUCua -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 22856 | 0.69 | 0.591576 |
Target: 5'- -cGCAGcCGCAACCUGuACUCGCA-GAUg -3' miRNA: 3'- gaUGUC-GUGUUGGGC-UGGGCGUuCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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