Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23356 | 5' | -57.1 | NC_005259.1 | + | 4683 | 0.68 | 0.624248 |
Target: 5'- uGGCUCGGGC-CGacagCUCG-GCcCCGugGu -3' miRNA: 3'- -CCGAGCUUGuGCa---GAGCgCG-GGCugC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 57612 | 0.68 | 0.617938 |
Target: 5'- aGCUCGAugACGUugCUCaucgagcggaaccauGUGCCCGcCGg -3' miRNA: 3'- cCGAGCUugUGCA--GAG---------------CGCGGGCuGC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 16520 | 0.68 | 0.613732 |
Target: 5'- aGGCgcugCGAGCGuCG-CUCaaggguGCGCCCGAgCGa -3' miRNA: 3'- -CCGa---GCUUGU-GCaGAG------CGCGGGCU-GC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 54355 | 0.68 | 0.613732 |
Target: 5'- aGGgUCGGGCaACGgauugcgCUCGCGaucaCCGAUGa -3' miRNA: 3'- -CCgAGCUUG-UGCa------GAGCGCg---GGCUGC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 11240 | 0.68 | 0.603231 |
Target: 5'- gGGCUCGGGCA--UCgCGCGCaccaCGugGg -3' miRNA: 3'- -CCGAGCUUGUgcAGaGCGCGg---GCugC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 52206 | 0.68 | 0.582304 |
Target: 5'- cGGCUCauGGGCaccGCGUUcCGCGCCCGcUGa -3' miRNA: 3'- -CCGAG--CUUG---UGCAGaGCGCGGGCuGC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 67441 | 0.67 | 0.68717 |
Target: 5'- cGCUUGAGCGCGUCgggGaUGCCCuuuucGGCGa -3' miRNA: 3'- cCGAGCUUGUGCAGag-C-GCGGG-----CUGC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 29056 | 0.67 | 0.68717 |
Target: 5'- aGCcgCGAGCGCGguaUCG-GCCCGAUc -3' miRNA: 3'- cCGa-GCUUGUGCag-AGCgCGGGCUGc -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 26653 | 0.67 | 0.676749 |
Target: 5'- cGCUCG-GCAgGUUcggCGCaCCCGGCGg -3' miRNA: 3'- cCGAGCuUGUgCAGa--GCGcGGGCUGC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 16933 | 0.67 | 0.676749 |
Target: 5'- gGGCUCGAAaugacccgcUACG-CUCGCcauUCCGACa -3' miRNA: 3'- -CCGAGCUU---------GUGCaGAGCGc--GGGCUGc -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 50429 | 0.67 | 0.666289 |
Target: 5'- cGGCUCGGGCAgCGgugCGgGCUCGGgGu -3' miRNA: 3'- -CCGAGCUUGU-GCagaGCgCGGGCUgC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 68703 | 0.67 | 0.6558 |
Target: 5'- aGGCggGcAGCGCGUCg-GUGCCCGAg- -3' miRNA: 3'- -CCGagC-UUGUGCAGagCGCGGGCUgc -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 58861 | 0.67 | 0.645291 |
Target: 5'- gGGCUCGccguCGUCgUCGuCGCCuCGGCa -3' miRNA: 3'- -CCGAGCuuguGCAG-AGC-GCGG-GCUGc -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 46874 | 0.67 | 0.645291 |
Target: 5'- aGGCUUGAAuCGCG-C-CGcCGCCCG-CGa -3' miRNA: 3'- -CCGAGCUU-GUGCaGaGC-GCGGGCuGC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 61733 | 0.67 | 0.645291 |
Target: 5'- --gUCGAGCAgGUg-UGCGUCCGGCGa -3' miRNA: 3'- ccgAGCUUGUgCAgaGCGCGGGCUGC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 42746 | 0.67 | 0.634771 |
Target: 5'- uGCUUGAGCAgGcgguUCUCGaucuGCUCGGCGg -3' miRNA: 3'- cCGAGCUUGUgC----AGAGCg---CGGGCUGC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 23689 | 0.67 | 0.634771 |
Target: 5'- aGGCgcacgcaGAcuacCGCGUCgugaUCGCGCCgGACGg -3' miRNA: 3'- -CCGag-----CUu---GUGCAG----AGCGCGGgCUGC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 17538 | 0.67 | 0.633718 |
Target: 5'- aGCgacggCGGGCAUuUCUacuucacCGUGCCCGACGa -3' miRNA: 3'- cCGa----GCUUGUGcAGA-------GCGCGGGCUGC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 16789 | 0.66 | 0.74834 |
Target: 5'- uGGgUCGAcgcgguCGCGUacaUCGCGCUCGGgGc -3' miRNA: 3'- -CCgAGCUu-----GUGCAg--AGCGCGGGCUgC- -5' |
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23356 | 5' | -57.1 | NC_005259.1 | + | 51665 | 0.66 | 0.697543 |
Target: 5'- cGCgCGGGCGCGUCgggcacggGCGCgCGAUGg -3' miRNA: 3'- cCGaGCUUGUGCAGag------CGCGgGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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