miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23364 3' -57.1 NC_005259.1 + 48920 0.66 0.708052
Target:  5'- cUGG-GC-CUGACCGacGCCACGcacaaGGCCa -3'
miRNA:   3'- cACUgCGuGACUGGCa-CGGUGC-----UCGG- -5'
23364 3' -57.1 NC_005259.1 + 6448 0.66 0.708052
Target:  5'- -cGuCGCGCUGAUCG-GCaGCGucGCCg -3'
miRNA:   3'- caCuGCGUGACUGGCaCGgUGCu-CGG- -5'
23364 3' -57.1 NC_005259.1 + 58182 0.66 0.708052
Target:  5'- -cGACGCACgucuUGACC--GCCGUGGGCUu -3'
miRNA:   3'- caCUGCGUG----ACUGGcaCGGUGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 22330 0.66 0.697571
Target:  5'- -cGACGCACUGuuCGcaggauuuaccGCCACGAuGCg -3'
miRNA:   3'- caCUGCGUGACugGCa----------CGGUGCU-CGg -5'
23364 3' -57.1 NC_005259.1 + 8952 0.66 0.69652
Target:  5'- -gGGCGCGCcGuggacgggcACCGUGCCGgGAcguagguGCCa -3'
miRNA:   3'- caCUGCGUGaC---------UGGCACGGUgCU-------CGG- -5'
23364 3' -57.1 NC_005259.1 + 50244 0.66 0.68703
Target:  5'- -gGGCGCg--GAUCGUgGCCaACGGGCUa -3'
miRNA:   3'- caCUGCGugaCUGGCA-CGG-UGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 14226 0.66 0.68703
Target:  5'- -cGGCGCGCg--UCGUGCguauCGGGCCg -3'
miRNA:   3'- caCUGCGUGacuGGCACGgu--GCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 20612 0.66 0.68703
Target:  5'- -cGGCGCACcgcGACCGUGUCGau-GCg -3'
miRNA:   3'- caCUGCGUGa--CUGGCACGGUgcuCGg -5'
23364 3' -57.1 NC_005259.1 + 67973 0.66 0.685973
Target:  5'- --cGCGCGCagcggcgUGGCCaccGCCGCGAGCg -3'
miRNA:   3'- cacUGCGUG-------ACUGGca-CGGUGCUCGg -5'
23364 3' -57.1 NC_005259.1 + 39991 0.66 0.67644
Target:  5'- -cGACGgGCUGAUC--GCCGcCGAGCa -3'
miRNA:   3'- caCUGCgUGACUGGcaCGGU-GCUCGg -5'
23364 3' -57.1 NC_005259.1 + 36139 0.66 0.66581
Target:  5'- -cGcCGgGCUGuCCGUcGCCAUG-GCCa -3'
miRNA:   3'- caCuGCgUGACuGGCA-CGGUGCuCGG- -5'
23364 3' -57.1 NC_005259.1 + 2019 0.66 0.66581
Target:  5'- gGUGGCGCACcGGCaccucaGUGCgGUGGGCg -3'
miRNA:   3'- -CACUGCGUGaCUGg-----CACGgUGCUCGg -5'
23364 3' -57.1 NC_005259.1 + 33907 0.67 0.64447
Target:  5'- -cGACGgGCcgaGACCG-GCCACGGuGCg -3'
miRNA:   3'- caCUGCgUGa--CUGGCaCGGUGCU-CGg -5'
23364 3' -57.1 NC_005259.1 + 20824 0.67 0.64447
Target:  5'- -cGGCGCaccaagGCUGACCGUgaGUC-CGAcGCCu -3'
miRNA:   3'- caCUGCG------UGACUGGCA--CGGuGCU-CGG- -5'
23364 3' -57.1 NC_005259.1 + 67745 0.67 0.64447
Target:  5'- -cGGCGgcCACUaGGCCGccccgGCCACcGGCCa -3'
miRNA:   3'- caCUGC--GUGA-CUGGCa----CGGUGcUCGG- -5'
23364 3' -57.1 NC_005259.1 + 25329 0.67 0.64447
Target:  5'- -cGACaucauccCGCUcACUGUGCC-CGAGCCg -3'
miRNA:   3'- caCUGc------GUGAcUGGCACGGuGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 66007 0.67 0.643401
Target:  5'- cGUGguGCGCACccucggGGCCGcacguguUGCgCGCGAGCUc -3'
miRNA:   3'- -CAC--UGCGUGa-----CUGGC-------ACG-GUGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 8836 0.67 0.623088
Target:  5'- uUGACGCGCUGcGCCGaccaccacagcgUGCC-CGccGCCu -3'
miRNA:   3'- cACUGCGUGAC-UGGC------------ACGGuGCu-CGG- -5'
23364 3' -57.1 NC_005259.1 + 33567 0.67 0.623088
Target:  5'- -aGAacCGCccgaACuUGACCGcGUCGCGGGCCa -3'
miRNA:   3'- caCU--GCG----UG-ACUGGCaCGGUGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 55616 0.67 0.612403
Target:  5'- --cGCGCGCcuUGGCCGggaucaggGCCuguagACGAGCCc -3'
miRNA:   3'- cacUGCGUG--ACUGGCa-------CGG-----UGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.