miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23365 5' -59.1 NC_005259.1 + 1850 0.66 0.582353
Target:  5'- cGCCGAGGC-CGagaaAGCC-GcCGCcGCGu -3'
miRNA:   3'- -CGGCUCCGuGUg---UCGGuCaGCGuCGC- -5'
23365 5' -59.1 NC_005259.1 + 8488 0.66 0.582353
Target:  5'- cGCUGucGGCACugaugguguGCA-CCAGaCGCAGCGa -3'
miRNA:   3'- -CGGCu-CCGUG---------UGUcGGUCaGCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 12371 0.66 0.571863
Target:  5'- aCCGAGGUAguCGGCgAGa-GCGGCa -3'
miRNA:   3'- cGGCUCCGUguGUCGgUCagCGUCGc -5'
23365 5' -59.1 NC_005259.1 + 10631 0.66 0.561418
Target:  5'- cGUCGAGGCcgaACAGCUuggccucgcGGUCG-AGCGc -3'
miRNA:   3'- -CGGCUCCGug-UGUCGG---------UCAGCgUCGC- -5'
23365 5' -59.1 NC_005259.1 + 37225 0.66 0.561418
Target:  5'- cGCCGGGGCGCugGcccguGCCGGauUgGCuGCc -3'
miRNA:   3'- -CGGCUCCGUGugU-----CGGUC--AgCGuCGc -5'
23365 5' -59.1 NC_005259.1 + 35650 0.66 0.551027
Target:  5'- uGCCGcuGGCGaggguGGCCAG-CGCGGUGg -3'
miRNA:   3'- -CGGCu-CCGUgug--UCGGUCaGCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 29598 0.66 0.540695
Target:  5'- uGCCGAGGCAauuGCAuCCGGUgGCAu-- -3'
miRNA:   3'- -CGGCUCCGUg--UGUcGGUCAgCGUcgc -5'
23365 5' -59.1 NC_005259.1 + 57950 0.66 0.540695
Target:  5'- aCCGAGGC-CAUGGCCcccauggucgaGGUCGCcGgGa -3'
miRNA:   3'- cGGCUCCGuGUGUCGG-----------UCAGCGuCgC- -5'
23365 5' -59.1 NC_005259.1 + 60569 0.67 0.534527
Target:  5'- uGCCGAcggucaggcGGCcCACGGCgAGUCgggugccgucaucgaGCAGCa -3'
miRNA:   3'- -CGGCU---------CCGuGUGUCGgUCAG---------------CGUCGc -5'
23365 5' -59.1 NC_005259.1 + 68572 0.67 0.530429
Target:  5'- aCCGAGGUggACcucguauccgGCGGCCAc-CGCAGCGu -3'
miRNA:   3'- cGGCUCCG--UG----------UGUCGGUcaGCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 5723 0.67 0.530429
Target:  5'- cGCCGGacGGCGgccauucuCGCGGCCAa--GCGGCGa -3'
miRNA:   3'- -CGGCU--CCGU--------GUGUCGGUcagCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 28965 0.67 0.520234
Target:  5'- cGCCGAGGU-CGguGCCgaGGcCGCgAGCGc -3'
miRNA:   3'- -CGGCUCCGuGUguCGG--UCaGCG-UCGC- -5'
23365 5' -59.1 NC_005259.1 + 36225 0.67 0.520234
Target:  5'- uGCCGA-GCACcuuGGCCAG-CGCgAGCGc -3'
miRNA:   3'- -CGGCUcCGUGug-UCGGUCaGCG-UCGC- -5'
23365 5' -59.1 NC_005259.1 + 25991 0.67 0.500084
Target:  5'- cGCCGAGGUGaacaACGGa-AGUaGCAGCGg -3'
miRNA:   3'- -CGGCUCCGUg---UGUCggUCAgCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 56355 0.67 0.500084
Target:  5'- uGCCcucGGGCACgcgguACAGCC-GUCGCGGg- -3'
miRNA:   3'- -CGGc--UCCGUG-----UGUCGGuCAGCGUCgc -5'
23365 5' -59.1 NC_005259.1 + 9158 0.67 0.500084
Target:  5'- cGUCGAcGGCAU---GCCGGUgGCAGCc -3'
miRNA:   3'- -CGGCU-CCGUGuguCGGUCAgCGUCGc -5'
23365 5' -59.1 NC_005259.1 + 45315 0.67 0.480287
Target:  5'- cGCCGAGGC-CGCcGCCGaacugCGUGGCc -3'
miRNA:   3'- -CGGCUCCGuGUGuCGGUca---GCGUCGc -5'
23365 5' -59.1 NC_005259.1 + 46594 0.67 0.480287
Target:  5'- cCCGAGGCGaGCAGCgC-GUCGuUGGCGg -3'
miRNA:   3'- cGGCUCCGUgUGUCG-GuCAGC-GUCGC- -5'
23365 5' -59.1 NC_005259.1 + 28019 0.68 0.470533
Target:  5'- cGCCGGGGUugcGCGCguuGGCCAGcCaCGGCu -3'
miRNA:   3'- -CGGCUCCG---UGUG---UCGGUCaGcGUCGc -5'
23365 5' -59.1 NC_005259.1 + 28782 0.68 0.470533
Target:  5'- -aCGAGGUAC-CcGCCGGUCGCuacGCc -3'
miRNA:   3'- cgGCUCCGUGuGuCGGUCAGCGu--CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.