miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23366 3' -56.5 NC_005259.1 + 37015 0.66 0.786792
Target:  5'- gCCCGcCGGggaacaugacaaUGUCGAUCuuGGUGCCc -3'
miRNA:   3'- -GGGCaGCCg-----------AUAGCUGGggCUAUGGc -5'
23366 3' -56.5 NC_005259.1 + 48367 0.66 0.77921
Target:  5'- -aCGUCGGUUGUCGACgcgUCUGuugucguUGCCGc -3'
miRNA:   3'- ggGCAGCCGAUAGCUG---GGGCu------AUGGC- -5'
23366 3' -56.5 NC_005259.1 + 52770 0.66 0.77921
Target:  5'- gCUCGUCGG-UGUCGGCagCGuGUGCCGu -3'
miRNA:   3'- -GGGCAGCCgAUAGCUGggGC-UAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 44406 0.66 0.778256
Target:  5'- -aCGUCGGUgcccgccUGACCggcagcgCCGAUACCGg -3'
miRNA:   3'- ggGCAGCCGaua----GCUGG-------GGCUAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 23739 0.66 0.769609
Target:  5'- -aCGUgGGacggCGACCCCGAcGCCc -3'
miRNA:   3'- ggGCAgCCgauaGCUGGGGCUaUGGc -5'
23366 3' -56.5 NC_005259.1 + 54311 0.66 0.769609
Target:  5'- aCCGUgcaCGGCUAUUucACCUCGggGCCa -3'
miRNA:   3'- gGGCA---GCCGAUAGc-UGGGGCuaUGGc -5'
23366 3' -56.5 NC_005259.1 + 4948 0.66 0.769609
Target:  5'- gCCCGaaaaCGGCUA-CGACgaUCCGGUAuCCGc -3'
miRNA:   3'- -GGGCa---GCCGAUaGCUG--GGGCUAU-GGC- -5'
23366 3' -56.5 NC_005259.1 + 5301 0.66 0.769609
Target:  5'- aCCGgUGGCcucacucgacAUCGACaacaCCGAUGCCGu -3'
miRNA:   3'- gGGCaGCCGa---------UAGCUGg---GGCUAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 18464 0.66 0.769609
Target:  5'- aCCGcCGGUccugagcCGugCCCGAcGCCGa -3'
miRNA:   3'- gGGCaGCCGaua----GCugGGGCUaUGGC- -5'
23366 3' -56.5 NC_005259.1 + 48268 0.66 0.759879
Target:  5'- gUCGUacuuaCGGUUGUCGACCuuGcgguugucGUACCGu -3'
miRNA:   3'- gGGCA-----GCCGAUAGCUGGggC--------UAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 41306 0.66 0.750029
Target:  5'- aUCCGUgaGcGCgagGUCGACCUCGAaaagggcggUGCCGu -3'
miRNA:   3'- -GGGCAg-C-CGa--UAGCUGGGGCU---------AUGGC- -5'
23366 3' -56.5 NC_005259.1 + 40621 0.66 0.74007
Target:  5'- gCCGUCGcGCa--CGAaCUCGAUGCCGu -3'
miRNA:   3'- gGGCAGC-CGauaGCUgGGGCUAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 18565 0.66 0.74007
Target:  5'- gCCGUaCGccGCcgcCGACCCCGAgcagACCGa -3'
miRNA:   3'- gGGCA-GC--CGauaGCUGGGGCUa---UGGC- -5'
23366 3' -56.5 NC_005259.1 + 30554 0.67 0.730011
Target:  5'- aCCGagCGGUUGUUGACgCCCuugGCCGc -3'
miRNA:   3'- gGGCa-GCCGAUAGCUG-GGGcuaUGGC- -5'
23366 3' -56.5 NC_005259.1 + 9513 0.67 0.719863
Target:  5'- gCUCGUCGcGCgcGUCGACCgccgCCGGgucACCGg -3'
miRNA:   3'- -GGGCAGC-CGa-UAGCUGG----GGCUa--UGGC- -5'
23366 3' -56.5 NC_005259.1 + 7424 0.67 0.719863
Target:  5'- gCCGUCGGCg---GugCCCGc-GCCGc -3'
miRNA:   3'- gGGCAGCCGauagCugGGGCuaUGGC- -5'
23366 3' -56.5 NC_005259.1 + 23929 0.67 0.709635
Target:  5'- aCgGUCGGCaccaguacaUGUUGcgcACCCCGAgacggGCCGa -3'
miRNA:   3'- gGgCAGCCG---------AUAGC---UGGGGCUa----UGGC- -5'
23366 3' -56.5 NC_005259.1 + 53257 0.67 0.699338
Target:  5'- aCCGUCGccgccGCUGUCG---CCGGUGCCGc -3'
miRNA:   3'- gGGCAGC-----CGAUAGCuggGGCUAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 60551 0.67 0.678576
Target:  5'- gCUCGUCGGCaug----CCCGGUGCCGa -3'
miRNA:   3'- -GGGCAGCCGauagcugGGGCUAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 42676 0.68 0.657652
Target:  5'- gCUGUUGGCgaucUCGACCCCGuugagGgCGa -3'
miRNA:   3'- gGGCAGCCGau--AGCUGGGGCua---UgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.