Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23366 | 3' | -56.5 | NC_005259.1 | + | 37015 | 0.66 | 0.786792 |
Target: 5'- gCCCGcCGGggaacaugacaaUGUCGAUCuuGGUGCCc -3' miRNA: 3'- -GGGCaGCCg-----------AUAGCUGGggCUAUGGc -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 48367 | 0.66 | 0.77921 |
Target: 5'- -aCGUCGGUUGUCGACgcgUCUGuugucguUGCCGc -3' miRNA: 3'- ggGCAGCCGAUAGCUG---GGGCu------AUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 52770 | 0.66 | 0.77921 |
Target: 5'- gCUCGUCGG-UGUCGGCagCGuGUGCCGu -3' miRNA: 3'- -GGGCAGCCgAUAGCUGggGC-UAUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 44406 | 0.66 | 0.778256 |
Target: 5'- -aCGUCGGUgcccgccUGACCggcagcgCCGAUACCGg -3' miRNA: 3'- ggGCAGCCGaua----GCUGG-------GGCUAUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 23739 | 0.66 | 0.769609 |
Target: 5'- -aCGUgGGacggCGACCCCGAcGCCc -3' miRNA: 3'- ggGCAgCCgauaGCUGGGGCUaUGGc -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 54311 | 0.66 | 0.769609 |
Target: 5'- aCCGUgcaCGGCUAUUucACCUCGggGCCa -3' miRNA: 3'- gGGCA---GCCGAUAGc-UGGGGCuaUGGc -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 4948 | 0.66 | 0.769609 |
Target: 5'- gCCCGaaaaCGGCUA-CGACgaUCCGGUAuCCGc -3' miRNA: 3'- -GGGCa---GCCGAUaGCUG--GGGCUAU-GGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 5301 | 0.66 | 0.769609 |
Target: 5'- aCCGgUGGCcucacucgacAUCGACaacaCCGAUGCCGu -3' miRNA: 3'- gGGCaGCCGa---------UAGCUGg---GGCUAUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 18464 | 0.66 | 0.769609 |
Target: 5'- aCCGcCGGUccugagcCGugCCCGAcGCCGa -3' miRNA: 3'- gGGCaGCCGaua----GCugGGGCUaUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 48268 | 0.66 | 0.759879 |
Target: 5'- gUCGUacuuaCGGUUGUCGACCuuGcgguugucGUACCGu -3' miRNA: 3'- gGGCA-----GCCGAUAGCUGGggC--------UAUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 41306 | 0.66 | 0.750029 |
Target: 5'- aUCCGUgaGcGCgagGUCGACCUCGAaaagggcggUGCCGu -3' miRNA: 3'- -GGGCAg-C-CGa--UAGCUGGGGCU---------AUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 40621 | 0.66 | 0.74007 |
Target: 5'- gCCGUCGcGCa--CGAaCUCGAUGCCGu -3' miRNA: 3'- gGGCAGC-CGauaGCUgGGGCUAUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 18565 | 0.66 | 0.74007 |
Target: 5'- gCCGUaCGccGCcgcCGACCCCGAgcagACCGa -3' miRNA: 3'- gGGCA-GC--CGauaGCUGGGGCUa---UGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 30554 | 0.67 | 0.730011 |
Target: 5'- aCCGagCGGUUGUUGACgCCCuugGCCGc -3' miRNA: 3'- gGGCa-GCCGAUAGCUG-GGGcuaUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 9513 | 0.67 | 0.719863 |
Target: 5'- gCUCGUCGcGCgcGUCGACCgccgCCGGgucACCGg -3' miRNA: 3'- -GGGCAGC-CGa-UAGCUGG----GGCUa--UGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 7424 | 0.67 | 0.719863 |
Target: 5'- gCCGUCGGCg---GugCCCGc-GCCGc -3' miRNA: 3'- gGGCAGCCGauagCugGGGCuaUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 23929 | 0.67 | 0.709635 |
Target: 5'- aCgGUCGGCaccaguacaUGUUGcgcACCCCGAgacggGCCGa -3' miRNA: 3'- gGgCAGCCG---------AUAGC---UGGGGCUa----UGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 53257 | 0.67 | 0.699338 |
Target: 5'- aCCGUCGccgccGCUGUCG---CCGGUGCCGc -3' miRNA: 3'- gGGCAGC-----CGAUAGCuggGGCUAUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 60551 | 0.67 | 0.678576 |
Target: 5'- gCUCGUCGGCaug----CCCGGUGCCGa -3' miRNA: 3'- -GGGCAGCCGauagcugGGGCUAUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 42676 | 0.68 | 0.657652 |
Target: 5'- gCUGUUGGCgaucUCGACCCCGuugagGgCGa -3' miRNA: 3'- gGGCAGCCGau--AGCUGGGGCua---UgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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