miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23367 5' -50.6 NC_005259.1 + 66665 0.66 0.970138
Target:  5'- gGCGGUgCUGCGAUGcuCAUCgUGccGCCCa -3'
miRNA:   3'- -CGCUA-GAUGUUGCu-GUAGgAC--UGGGg -5'
23367 5' -50.6 NC_005259.1 + 47293 0.66 0.970138
Target:  5'- cGCcGUCgccggACAGCGACcccuuggCCUGACCg- -3'
miRNA:   3'- -CGcUAGa----UGUUGCUGua-----GGACUGGgg -5'
23367 5' -50.6 NC_005259.1 + 57968 0.66 0.963349
Target:  5'- aUGGUCgagguCGcCGGgAUCgUGACCCCg -3'
miRNA:   3'- cGCUAGau---GUuGCUgUAGgACUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 20137 0.66 0.963349
Target:  5'- uGCcGUCgcgAUGACGGCAgccggugcCCUGGCCaCCg -3'
miRNA:   3'- -CGcUAGa--UGUUGCUGUa-------GGACUGG-GG- -5'
23367 5' -50.6 NC_005259.1 + 36775 0.66 0.963349
Target:  5'- gGCGcgUUGC--CGcCGUCCUGACCgCu -3'
miRNA:   3'- -CGCuaGAUGuuGCuGUAGGACUGGgG- -5'
23367 5' -50.6 NC_005259.1 + 46749 0.66 0.959579
Target:  5'- cGCGAUggCUGCGcCGACA-CCUG-CgCCg -3'
miRNA:   3'- -CGCUA--GAUGUuGCUGUaGGACuGgGG- -5'
23367 5' -50.6 NC_005259.1 + 541 0.66 0.959579
Target:  5'- gGCaGAUCU-CGugGAcCAagCUGACCCg -3'
miRNA:   3'- -CG-CUAGAuGUugCU-GUagGACUGGGg -5'
23367 5' -50.6 NC_005259.1 + 33998 0.66 0.959579
Target:  5'- uGCGGUgagCUGCAAcCGGCuguAUCC-GGCCUCg -3'
miRNA:   3'- -CGCUA---GAUGUU-GCUG---UAGGaCUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 42509 0.66 0.955551
Target:  5'- gGCGGUgUGgcCAGCaGcCGUCC-GGCCCCg -3'
miRNA:   3'- -CGCUAgAU--GUUG-CuGUAGGaCUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 23641 0.66 0.955551
Target:  5'- uGUGGUUUcggcccgccgACGGCGACGgcuggaCCgccGACCCCg -3'
miRNA:   3'- -CGCUAGA----------UGUUGCUGUa-----GGa--CUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 14238 0.66 0.955551
Target:  5'- uGCGuAUCgggccggGCAACGACGaCCgUGucgucACCCCg -3'
miRNA:   3'- -CGC-UAGa------UGUUGCUGUaGG-AC-----UGGGG- -5'
23367 5' -50.6 NC_005259.1 + 41103 0.66 0.951258
Target:  5'- gGCGGUCggcggUAUGACGAUGUCggcgGugCCCg -3'
miRNA:   3'- -CGCUAG-----AUGUUGCUGUAGga--CugGGG- -5'
23367 5' -50.6 NC_005259.1 + 29969 0.66 0.951258
Target:  5'- gGCGG---GCggUGAcCGUCCaacgGACCCCg -3'
miRNA:   3'- -CGCUagaUGuuGCU-GUAGGa---CUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 35678 0.66 0.951258
Target:  5'- gGUGGUgcACAGCGACG-CC-GugCCCg -3'
miRNA:   3'- -CGCUAgaUGUUGCUGUaGGaCugGGG- -5'
23367 5' -50.6 NC_005259.1 + 42265 0.67 0.946696
Target:  5'- gGUGGUC-ACGucgaggcccuUGACAUCCaUGACCCa -3'
miRNA:   3'- -CGCUAGaUGUu---------GCUGUAGG-ACUGGGg -5'
23367 5' -50.6 NC_005259.1 + 27395 0.67 0.946696
Target:  5'- gGCGGUgUcgGCAGCGGCGgcagCUcgGugCCCg -3'
miRNA:   3'- -CGCUAgA--UGUUGCUGUa---GGa-CugGGG- -5'
23367 5' -50.6 NC_005259.1 + 5657 0.67 0.946696
Target:  5'- gGCGGgcgCUACAcgcGCGACAaCaucGCCCCg -3'
miRNA:   3'- -CGCUa--GAUGU---UGCUGUaGgacUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 26183 0.67 0.941862
Target:  5'- uGCGAUCUcCAgaauguGCGGCAgcaUGGCCgCCg -3'
miRNA:   3'- -CGCUAGAuGU------UGCUGUaggACUGG-GG- -5'
23367 5' -50.6 NC_005259.1 + 1270 0.67 0.936752
Target:  5'- -gGAUC-ACGAgaACGUCCUgcacGACCCCg -3'
miRNA:   3'- cgCUAGaUGUUgcUGUAGGA----CUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 27792 0.67 0.936752
Target:  5'- cGCGGUCaucgACcACGACGUgauacgagaCCUGGCUCg -3'
miRNA:   3'- -CGCUAGa---UGuUGCUGUA---------GGACUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.