miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23370 3' -50.3 NC_005259.1 + 67914 0.73 0.645111
Target:  5'- uCGGCGAGGucaAGCgcguagguCGCGAggaugaucuUGCGGUGCg -3'
miRNA:   3'- -GUUGCUCU---UCGau------GCGUU---------ACGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 67216 0.66 0.963793
Target:  5'- uCGGCGGGGucgauGCcgAC-CAcgGCGGUGUa -3'
miRNA:   3'- -GUUGCUCUu----CGa-UGcGUuaCGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 66905 0.66 0.95998
Target:  5'- aCGGCGguAGAuccGGCaGCGC---GCGGUGCu -3'
miRNA:   3'- -GUUGC--UCU---UCGaUGCGuuaCGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 62596 0.67 0.936253
Target:  5'- uCGAUGAGAGGCUGugugagcugacgcCGCAccGUGGccaGCa -3'
miRNA:   3'- -GUUGCUCUUCGAU-------------GCGUuaCGCCa--CG- -5'
23370 3' -50.3 NC_005259.1 + 60226 0.67 0.930732
Target:  5'- uCGGCGcuGAGCUcgcuggcACGCuugcGUGCgGGUGCa -3'
miRNA:   3'- -GUUGCucUUCGA-------UGCGu---UACG-CCACG- -5'
23370 3' -50.3 NC_005259.1 + 59886 0.67 0.936789
Target:  5'- aAACcGGggGCgACGCGAcuUGGUGCc -3'
miRNA:   3'- gUUGcUCuuCGaUGCGUUacGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 59135 0.66 0.963793
Target:  5'- gAGCGucGAGCUcgGCA--GCGGUGCc -3'
miRNA:   3'- gUUGCucUUCGAugCGUuaCGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 57018 0.67 0.913084
Target:  5'- uCAGCGc--GGCUcgGCGCGGUGgGGUcGCa -3'
miRNA:   3'- -GUUGCucuUCGA--UGCGUUACgCCA-CG- -5'
23370 3' -50.3 NC_005259.1 + 54500 0.66 0.94691
Target:  5'- uCGGCGGGcauGGCg--GCGAUGUGGggugGCg -3'
miRNA:   3'- -GUUGCUCu--UCGaugCGUUACGCCa---CG- -5'
23370 3' -50.3 NC_005259.1 + 54019 0.73 0.656366
Target:  5'- cCAGCGAc--GCUcggGCGCGGUGCGGUcuGCg -3'
miRNA:   3'- -GUUGCUcuuCGA---UGCGUUACGCCA--CG- -5'
23370 3' -50.3 NC_005259.1 + 51864 0.68 0.899502
Target:  5'- -cACGAGcucAGGCUAcCGCGAgGUGGUGa -3'
miRNA:   3'- guUGCUC---UUCGAU-GCGUUaCGCCACg -5'
23370 3' -50.3 NC_005259.1 + 50688 0.66 0.951544
Target:  5'- cCGACGAGgcGCUgcucgucgucGCGCuugaGCcgGGUGCu -3'
miRNA:   3'- -GUUGCUCuuCGA----------UGCGuua-CG--CCACG- -5'
23370 3' -50.3 NC_005259.1 + 49736 0.66 0.963793
Target:  5'- gCGGCGAG-AGCUGCucguCAGUGaCGGUcuuGCc -3'
miRNA:   3'- -GUUGCUCuUCGAUGc---GUUAC-GCCA---CG- -5'
23370 3' -50.3 NC_005259.1 + 49350 0.73 0.666476
Target:  5'- aGGCGAGAGGUgccGCGCGAUGaagaggcCGGUGa -3'
miRNA:   3'- gUUGCUCUUCGa--UGCGUUAC-------GCCACg -5'
23370 3' -50.3 NC_005259.1 + 38223 0.69 0.852188
Target:  5'- aCAGCGAGAAGUaGCGUGGaucaGCgauGGUGCc -3'
miRNA:   3'- -GUUGCUCUUCGaUGCGUUa---CG---CCACG- -5'
23370 3' -50.3 NC_005259.1 + 37740 0.67 0.930732
Target:  5'- cCGACGAGcuGCUcgaugaccaGCGCGGuggccccUGCGG-GCa -3'
miRNA:   3'- -GUUGCUCuuCGA---------UGCGUU-------ACGCCaCG- -5'
23370 3' -50.3 NC_005259.1 + 35656 0.76 0.480179
Target:  5'- uGGCGAGGguGGCcaGCGCGGUgGUGGUGCa -3'
miRNA:   3'- gUUGCUCU--UCGa-UGCGUUA-CGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 33715 0.68 0.884034
Target:  5'- gGACG-GAuuCUGCGCGAUgaugucgcguggaGCGGUGUg -3'
miRNA:   3'- gUUGCuCUucGAUGCGUUA-------------CGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 31231 0.7 0.806075
Target:  5'- cCGAUGAGAccaUUGgGCGcgGCGGUGCc -3'
miRNA:   3'- -GUUGCUCUuc-GAUgCGUuaCGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 30498 0.66 0.951544
Target:  5'- cCGGCGAGAccUUGCGCGAUGUGuUGa -3'
miRNA:   3'- -GUUGCUCUucGAUGCGUUACGCcACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.