miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23375 5' -54.4 NC_005259.1 + 14287 0.82 0.136621
Target:  5'- gCCUGCCCAACcaccgauGUCGGUgcguaUGGCCGCc -3'
miRNA:   3'- -GGACGGGUUGuu-----CAGCCAg----ACUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 9580 0.77 0.284079
Target:  5'- -gUGCUcguCAACGucGUCGGUCUGGCCGUa -3'
miRNA:   3'- ggACGG---GUUGUu-CAGCCAGACUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 37517 0.76 0.32092
Target:  5'- gCUGCCCGACGAGaagaUC-GUCgGGCCGCc -3'
miRNA:   3'- gGACGGGUUGUUC----AGcCAGaCUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 63705 0.75 0.328704
Target:  5'- gCCUGCCCAGCGGGgaUCGGggcCUGcgcaGCCGg -3'
miRNA:   3'- -GGACGGGUUGUUC--AGCCa--GAC----UGGCg -5'
23375 5' -54.4 NC_005259.1 + 50487 0.75 0.352888
Target:  5'- cCCUGCUCGAUGAGcCGGUCgaugugggcgGugCGCu -3'
miRNA:   3'- -GGACGGGUUGUUCaGCCAGa---------CugGCG- -5'
23375 5' -54.4 NC_005259.1 + 3170 0.72 0.471369
Target:  5'- -aUGCCCGGCGAuGUCaaGGUCgucgGugCGCg -3'
miRNA:   3'- ggACGGGUUGUU-CAG--CCAGa---CugGCG- -5'
23375 5' -54.4 NC_005259.1 + 40004 0.72 0.522047
Target:  5'- gCC-GCCgAGCAuGagGGUCUGACCGg -3'
miRNA:   3'- -GGaCGGgUUGUuCagCCAGACUGGCg -5'
23375 5' -54.4 NC_005259.1 + 13483 0.71 0.547121
Target:  5'- gCUGCCCGACGAuGUCucggucccucgccccGGUCUgucggucaccgaGACUGCg -3'
miRNA:   3'- gGACGGGUUGUU-CAG---------------CCAGA------------CUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 58541 0.71 0.559802
Target:  5'- uCCUGCCCGuCGAGguuacggcucgggCGGUUgggccgGAUCGCg -3'
miRNA:   3'- -GGACGGGUuGUUCa------------GCCAGa-----CUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 58958 0.71 0.562985
Target:  5'- cCUUGgCCAGCAGGUCGGgcagCUcgucggcGACgGCg -3'
miRNA:   3'- -GGACgGGUUGUUCAGCCa---GA-------CUGgCG- -5'
23375 5' -54.4 NC_005259.1 + 48098 0.7 0.596125
Target:  5'- --aGCCCGACGGGUCcGGUCaGgaaaccgagcacACCGCc -3'
miRNA:   3'- ggaCGGGUUGUUCAG-CCAGaC------------UGGCG- -5'
23375 5' -54.4 NC_005259.1 + 66753 0.7 0.606888
Target:  5'- gCUGCCCGGCcuGcCaGUC-GACCGCc -3'
miRNA:   3'- gGACGGGUUGuuCaGcCAGaCUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 45467 0.7 0.617671
Target:  5'- -gUGCCgAACGGGcCGaGcuUCUGGCCGCu -3'
miRNA:   3'- ggACGGgUUGUUCaGC-C--AGACUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 25808 0.7 0.628466
Target:  5'- gCUGCaCGGCGAGaccgauauaGGUCUGACCGg -3'
miRNA:   3'- gGACGgGUUGUUCag-------CCAGACUGGCg -5'
23375 5' -54.4 NC_005259.1 + 45593 0.7 0.628466
Target:  5'- aUCUGCaCCAGCAccgacAGcUCGGUCUcGAugcCCGCc -3'
miRNA:   3'- -GGACG-GGUUGU-----UC-AGCCAGA-CU---GGCG- -5'
23375 5' -54.4 NC_005259.1 + 65450 0.7 0.639264
Target:  5'- aCCUGCgaacaaCAACGAGgccgacuccgCGuGUCUGGCUGCc -3'
miRNA:   3'- -GGACGg-----GUUGUUCa---------GC-CAGACUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 44398 0.69 0.660833
Target:  5'- --cGCCgAGCAcGUCGGUgcccgcCUGACCGg -3'
miRNA:   3'- ggaCGGgUUGUuCAGCCA------GACUGGCg -5'
23375 5' -54.4 NC_005259.1 + 28309 0.69 0.660833
Target:  5'- cCCUGCgCAGCGuAGaUCGGUgUG-CCGUc -3'
miRNA:   3'- -GGACGgGUUGU-UC-AGCCAgACuGGCG- -5'
23375 5' -54.4 NC_005259.1 + 22469 0.69 0.660833
Target:  5'- --cGCCC-GCg---CGGUCUGACCGUc -3'
miRNA:   3'- ggaCGGGuUGuucaGCCAGACUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 30379 0.69 0.671584
Target:  5'- gCUGCCCGGCGAGaaacCGGgccUCU-ACCGUa -3'
miRNA:   3'- gGACGGGUUGUUCa---GCC---AGAcUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.