Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23375 | 5' | -54.4 | NC_005259.1 | + | 49555 | 0.66 | 0.848726 |
Target: 5'- -gUGCCgGGCuguucGUCGGUCgUGGCCa- -3' miRNA: 3'- ggACGGgUUGuu---CAGCCAG-ACUGGcg -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 45467 | 0.7 | 0.617671 |
Target: 5'- -gUGCCgAACGGGcCGaGcuUCUGGCCGCu -3' miRNA: 3'- ggACGGgUUGUUCaGC-C--AGACUGGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 25808 | 0.7 | 0.628466 |
Target: 5'- gCUGCaCGGCGAGaccgauauaGGUCUGACCGg -3' miRNA: 3'- gGACGgGUUGUUCag-------CCAGACUGGCg -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 45593 | 0.7 | 0.628466 |
Target: 5'- aUCUGCaCCAGCAccgacAGcUCGGUCUcGAugcCCGCc -3' miRNA: 3'- -GGACG-GGUUGU-----UC-AGCCAGA-CU---GGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 65450 | 0.7 | 0.639264 |
Target: 5'- aCCUGCgaacaaCAACGAGgccgacuccgCGuGUCUGGCUGCc -3' miRNA: 3'- -GGACGg-----GUUGUUCa---------GC-CAGACUGGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 22469 | 0.69 | 0.660833 |
Target: 5'- --cGCCC-GCg---CGGUCUGACCGUc -3' miRNA: 3'- ggaCGGGuUGuucaGCCAGACUGGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 28309 | 0.69 | 0.660833 |
Target: 5'- cCCUGCgCAGCGuAGaUCGGUgUG-CCGUc -3' miRNA: 3'- -GGACGgGUUGU-UC-AGCCAgACuGGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 44398 | 0.69 | 0.660833 |
Target: 5'- --cGCCgAGCAcGUCGGUgcccgcCUGACCGg -3' miRNA: 3'- ggaCGGgUUGUuCAGCCA------GACUGGCg -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 21265 | 0.69 | 0.671584 |
Target: 5'- --aGCCCAugGucGUCGGcCUGACgaGCa -3' miRNA: 3'- ggaCGGGUugUu-CAGCCaGACUGg-CG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 66753 | 0.7 | 0.606888 |
Target: 5'- gCUGCCCGGCcuGcCaGUC-GACCGCc -3' miRNA: 3'- gGACGGGUUGuuCaGcCAGaCUGGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 48098 | 0.7 | 0.596125 |
Target: 5'- --aGCCCGACGGGUCcGGUCaGgaaaccgagcacACCGCc -3' miRNA: 3'- ggaCGGGUUGUUCAG-CCAGaC------------UGGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 58958 | 0.71 | 0.562985 |
Target: 5'- cCUUGgCCAGCAGGUCGGgcagCUcgucggcGACgGCg -3' miRNA: 3'- -GGACgGGUUGUUCAGCCa---GA-------CUGgCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 9580 | 0.77 | 0.284079 |
Target: 5'- -gUGCUcguCAACGucGUCGGUCUGGCCGUa -3' miRNA: 3'- ggACGG---GUUGUu-CAGCCAGACUGGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 37517 | 0.76 | 0.32092 |
Target: 5'- gCUGCCCGACGAGaagaUC-GUCgGGCCGCc -3' miRNA: 3'- gGACGGGUUGUUC----AGcCAGaCUGGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 63705 | 0.75 | 0.328704 |
Target: 5'- gCCUGCCCAGCGGGgaUCGGggcCUGcgcaGCCGg -3' miRNA: 3'- -GGACGGGUUGUUC--AGCCa--GAC----UGGCg -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 50487 | 0.75 | 0.352888 |
Target: 5'- cCCUGCUCGAUGAGcCGGUCgaugugggcgGugCGCu -3' miRNA: 3'- -GGACGGGUUGUUCaGCCAGa---------CugGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 3170 | 0.72 | 0.471369 |
Target: 5'- -aUGCCCGGCGAuGUCaaGGUCgucgGugCGCg -3' miRNA: 3'- ggACGGGUUGUU-CAG--CCAGa---CugGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 40004 | 0.72 | 0.522047 |
Target: 5'- gCC-GCCgAGCAuGagGGUCUGACCGg -3' miRNA: 3'- -GGaCGGgUUGUuCagCCAGACUGGCg -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 13483 | 0.71 | 0.547121 |
Target: 5'- gCUGCCCGACGAuGUCucggucccucgccccGGUCUgucggucaccgaGACUGCg -3' miRNA: 3'- gGACGGGUUGUU-CAG---------------CCAGA------------CUGGCG- -5' |
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23375 | 5' | -54.4 | NC_005259.1 | + | 58541 | 0.71 | 0.559802 |
Target: 5'- uCCUGCCCGuCGAGguuacggcucgggCGGUUgggccgGAUCGCg -3' miRNA: 3'- -GGACGGGUuGUUCa------------GCCAGa-----CUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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