miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23375 5' -54.4 NC_005259.1 + 3170 0.72 0.471369
Target:  5'- -aUGCCCGGCGAuGUCaaGGUCgucgGugCGCg -3'
miRNA:   3'- ggACGGGUUGUU-CAG--CCAGa---CugGCG- -5'
23375 5' -54.4 NC_005259.1 + 6537 0.68 0.724593
Target:  5'- aCCgGCCUcggGGCGAG-CGGUgaagCUGugCGCg -3'
miRNA:   3'- -GGaCGGG---UUGUUCaGCCA----GACugGCG- -5'
23375 5' -54.4 NC_005259.1 + 8046 0.69 0.692968
Target:  5'- aCUGUCCGACAccGcCGGUC--GCCGCc -3'
miRNA:   3'- gGACGGGUUGUu-CaGCCAGacUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 9580 0.77 0.284079
Target:  5'- -gUGCUcguCAACGucGUCGGUCUGGCCGUa -3'
miRNA:   3'- ggACGG---GUUGUu-CAGCCAGACUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 13483 0.71 0.547121
Target:  5'- gCUGCCCGACGAuGUCucggucccucgccccGGUCUgucggucaccgaGACUGCg -3'
miRNA:   3'- gGACGGGUUGUU-CAG---------------CCAGA------------CUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 14287 0.82 0.136621
Target:  5'- gCCUGCCCAACcaccgauGUCGGUgcguaUGGCCGCc -3'
miRNA:   3'- -GGACGGGUUGuu-----CAGCCAg----ACUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 15076 0.68 0.714126
Target:  5'- cCCUgGCCCuu-GAGcCGGUCaUGcGCCGCa -3'
miRNA:   3'- -GGA-CGGGuugUUCaGCCAG-AC-UGGCG- -5'
23375 5' -54.4 NC_005259.1 + 18693 0.67 0.785158
Target:  5'- gUCUGCUUgAGCAcGgCGGUCUGACCu- -3'
miRNA:   3'- -GGACGGG-UUGUuCaGCCAGACUGGcg -5'
23375 5' -54.4 NC_005259.1 + 18834 0.66 0.822619
Target:  5'- aUCUGCCCggUGAG--GGUCUcGCCGg -3'
miRNA:   3'- -GGACGGGuuGUUCagCCAGAcUGGCg -5'
23375 5' -54.4 NC_005259.1 + 20884 0.67 0.794779
Target:  5'- -gUGCCCAACAucGGuagcuacauguUCGGUCUGucucCCGa -3'
miRNA:   3'- ggACGGGUUGU--UC-----------AGCCAGACu---GGCg -5'
23375 5' -54.4 NC_005259.1 + 21265 0.69 0.671584
Target:  5'- --aGCCCAugGucGUCGGcCUGACgaGCa -3'
miRNA:   3'- ggaCGGGUugUu-CAGCCaGACUGg-CG- -5'
23375 5' -54.4 NC_005259.1 + 22469 0.69 0.660833
Target:  5'- --cGCCC-GCg---CGGUCUGACCGUc -3'
miRNA:   3'- ggaCGGGuUGuucaGCCAGACUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 22620 0.66 0.822619
Target:  5'- aCCgccGCCCGAucaucuucgcCGcGUCGGUCgacGCCGCc -3'
miRNA:   3'- -GGa--CGGGUU----------GUuCAGCCAGac-UGGCG- -5'
23375 5' -54.4 NC_005259.1 + 25808 0.7 0.628466
Target:  5'- gCUGCaCGGCGAGaccgauauaGGUCUGACCGg -3'
miRNA:   3'- gGACGgGUUGUUCag-------CCAGACUGGCg -5'
23375 5' -54.4 NC_005259.1 + 28265 0.66 0.822619
Target:  5'- aUUGCCCGAaaccGUCGGcUCUG-CCGa -3'
miRNA:   3'- gGACGGGUUguu-CAGCC-AGACuGGCg -5'
23375 5' -54.4 NC_005259.1 + 28309 0.69 0.660833
Target:  5'- cCCUGCgCAGCGuAGaUCGGUgUG-CCGUc -3'
miRNA:   3'- -GGACGgGUUGU-UC-AGCCAgACuGGCG- -5'
23375 5' -54.4 NC_005259.1 + 28952 0.69 0.692968
Target:  5'- uCCUGCgCCGcaucGCcgAGGUCGGUgCcgaGGCCGCg -3'
miRNA:   3'- -GGACG-GGU----UG--UUCAGCCA-Ga--CUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 30379 0.69 0.671584
Target:  5'- gCUGCCCGGCGAGaaacCGGgccUCU-ACCGUa -3'
miRNA:   3'- gGACGGGUUGUUCa---GCC---AGAcUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 30536 0.66 0.840232
Target:  5'- cCCUGCaugaucauggCCAcCGAG-CGGUUguugacgcccuUGGCCGCa -3'
miRNA:   3'- -GGACG----------GGUuGUUCaGCCAG-----------ACUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 35694 0.68 0.745252
Target:  5'- gCCgUGCCCGGCGAGg-GGUCgcUGAcgagguauCCGCc -3'
miRNA:   3'- -GG-ACGGGUUGUUCagCCAG--ACU--------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.