miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23378 3' -57.8 NC_005259.1 + 547 0.66 0.639478
Target:  5'- -uCUCGuGGaCCaaGCUGACCC--GCACCa -3'
miRNA:   3'- ucGAGCuCC-GG--UGACUGGGacUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 778 0.69 0.43419
Target:  5'- cGC-CGAGGCgGCUG-CCCUcgguuggGugGCCa -3'
miRNA:   3'- uCGaGCUCCGgUGACuGGGA-------CugUGG- -5'
23378 3' -57.8 NC_005259.1 + 1539 0.67 0.544248
Target:  5'- cGGCaucaUCGGGGCCGCguucggGGCggUGACGCUg -3'
miRNA:   3'- -UCG----AGCUCCGGUGa-----CUGggACUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 2128 0.66 0.618141
Target:  5'- cGC-CGAGGUCACgcaGACCC--GCACg -3'
miRNA:   3'- uCGaGCUCCGGUGa--CUGGGacUGUGg -5'
23378 3' -57.8 NC_005259.1 + 2933 0.68 0.52361
Target:  5'- uAGCgaaagCGuccaAGGCgCGCgaGACCCUGGcCACCg -3'
miRNA:   3'- -UCGa----GC----UCCG-GUGa-CUGGGACU-GUGG- -5'
23378 3' -57.8 NC_005259.1 + 3830 0.67 0.565143
Target:  5'- ---aCGGGGCCACgacgaUGuCCCUcGCACCg -3'
miRNA:   3'- ucgaGCUCCGGUG-----ACuGGGAcUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 10341 0.66 0.650141
Target:  5'- gGGCUCGGcGGCaGCgGGCUC-GACAUCg -3'
miRNA:   3'- -UCGAGCU-CCGgUGaCUGGGaCUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 13146 0.68 0.52361
Target:  5'- cGGCUCGAucauGGCCACcauCCCgcccGAgACCg -3'
miRNA:   3'- -UCGAGCU----CCGGUGacuGGGa---CUgUGG- -5'
23378 3' -57.8 NC_005259.1 + 13432 0.66 0.628808
Target:  5'- cGC-CGGGGCCGCgcuaggcgUGACCgUcGGCGCg -3'
miRNA:   3'- uCGaGCUCCGGUG--------ACUGGgA-CUGUGg -5'
23378 3' -57.8 NC_005259.1 + 13683 0.68 0.52361
Target:  5'- uGCUCGuggacccguGGCCGgUcGACCCcgccucGACACCg -3'
miRNA:   3'- uCGAGCu--------CCGGUgA-CUGGGa-----CUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 14750 0.7 0.381168
Target:  5'- cGCUgGccGGGCCGgUGAUCCUGcacaacGCGCCg -3'
miRNA:   3'- uCGAgC--UCCGGUgACUGGGAC------UGUGG- -5'
23378 3' -57.8 NC_005259.1 + 15139 0.66 0.650141
Target:  5'- aGGUguaCGGGGCCACcucggUGGCCgaGGCcgagGCCa -3'
miRNA:   3'- -UCGa--GCUCCGGUG-----ACUGGgaCUG----UGG- -5'
23378 3' -57.8 NC_005259.1 + 16814 0.73 0.254058
Target:  5'- cGCUCGGGGCCGgggucaUGAUCC-GACACa -3'
miRNA:   3'- uCGAGCUCCGGUg-----ACUGGGaCUGUGg -5'
23378 3' -57.8 NC_005259.1 + 17278 0.7 0.424903
Target:  5'- uGCUCGAccGCUAUuugaagcgguacuUGACCCUGuACGCCg -3'
miRNA:   3'- uCGAGCUc-CGGUG-------------ACUGGGAC-UGUGG- -5'
23378 3' -57.8 NC_005259.1 + 17406 0.67 0.565143
Target:  5'- cAGCUacagagguucuaCGAGGCCGCacuGCCCgagGACAUUg -3'
miRNA:   3'- -UCGA------------GCUCCGGUGac-UGGGa--CUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 17820 0.66 0.650141
Target:  5'- gAGCUcagCGAGGCCAUcgacgggugGGCCgaGGcCACCc -3'
miRNA:   3'- -UCGA---GCUCCGGUGa--------CUGGgaCU-GUGG- -5'
23378 3' -57.8 NC_005259.1 + 18177 0.66 0.628808
Target:  5'- uGGCagUCGAGGUC---GACCCcGACAUCg -3'
miRNA:   3'- -UCG--AGCUCCGGugaCUGGGaCUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 20456 0.68 0.507318
Target:  5'- gAGC-CGGGGUgGCUcggaugaccgccgucGACCUcGACACCg -3'
miRNA:   3'- -UCGaGCUCCGgUGA---------------CUGGGaCUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 21004 0.66 0.628808
Target:  5'- -aCUCG-GGCgGC-GACCCUGACcggcagcugACCg -3'
miRNA:   3'- ucGAGCuCCGgUGaCUGGGACUG---------UGG- -5'
23378 3' -57.8 NC_005259.1 + 21567 0.66 0.618141
Target:  5'- uGCgaacacugCGAGGUCgAUUGGCCaugcGACACCg -3'
miRNA:   3'- uCGa-------GCUCCGG-UGACUGGga--CUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.